RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 PAX1P15863 534 aa14.56□□□□□ -0.08
NUP88-210ENST00000574867 CDKN1AP38936 164 aa14.56□□□□□ -0.08
NUP88-210ENST00000574867 YIF1BQ5BJH7 314 aa14.56□□□□□ -0.08
NUP88-210ENST00000574867 FAM209AQ5JX71 171 aa14.56□□□□□ -0.08
NUP88-210ENST00000574867 CDH24Q86UP0 819 aa14.56□□□□□ -0.08
NUP88-210ENST00000574867 GPR148Q8TDV2 347 aa14.56□□□□□ -0.08
NUP88-210ENST00000574867 TRMT61AQ96FX7 289 aaKnown RBP14.56□□□□□ -0.08
NUP88-210ENST00000574867 VRK1Q99986 396 aaPredicted RBP14.56□□□□□ -0.08
NUP88-210ENST00000574867 PAPOLGQ9BWT3 736 aaKnown RBP14.56□□□□□ -0.08
NUP88-210ENST00000574867 ZNF701Q9NV72 531 aaPredicted RBP14.56□□□□□ -0.08
NUP88-210ENST00000574867 MPC1Q9Y5U8 109 aa14.56□□□□□ -0.08
NUP88-210ENST00000574867 SPG11Q96JI7 2443 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 PNMA8CA0A1B0GUJ8 204 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 GMDSO60547 372 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 IGHV1-46P01743 117 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 FAHP16930 419 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 TNFSF4P23510 183 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 TPBGQ13641 420 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 OR13C3Q8NGS6 347 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 GTF3AQ92664 365 aaKnown RBP14.55□□□□□ -0.08
NUP88-210ENST00000574867 MBD6Q96DN6 1003 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 ELMOD3Q96FG2 381 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 OPALINQ96PE5 141 aa14.55□□□□□ -0.08
NUP88-210ENST00000574867 ADAT1Q9BUB4 502 aaKnown RBP14.55□□□□□ -0.08
NUP88-210ENST00000574867 FLNBO75369 2602 aaKnown RBP14.55□□□□□ -0.08
NUP88-210ENST00000574867 CA6P23280 308 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 OR2Z1Q8NG97 314 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 OR51A4Q8NGJ6 313 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 OR10AC1Q8NH08 325 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 TSEN15Q8WW01 171 aaKnown RBP14.54□□□□□ -0.08
NUP88-210ENST00000574867 RGP1Q92546 391 aaPredicted RBP14.54□□□□□ -0.08
NUP88-210ENST00000574867 TPK1Q9H3S4 243 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 DHDHQ9UQ10 334 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 RHBDD3Q9Y3P4 386 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 ANKRD17O75179 2603 aaKnown RBP14.54□□□□□ -0.08
NUP88-210ENST00000574867 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.54□□□□□ -0.08
NUP88-210ENST00000574867 H3BSH0 61 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 SPRY3O43610 288 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 CD55P08174 381 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 CPEP16870 476 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 OR8G1Q15617 311 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 SPERTQ8NA61 448 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 NEU4Q8WWR8 484 aaPredicted RBP14.54□□□□□ -0.08
NUP88-210ENST00000574867 PP6455Q8WZ26 134 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 THRSPQ92748 146 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 SORCS2Q96PQ0 1159 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 GSX2Q9BZM3 304 aa14.54□□□□□ -0.08
NUP88-210ENST00000574867 ZNF275Q9NSD4 429 aaPredicted RBP14.54□□□□□ -0.08
NUP88-210ENST00000574867 TACC2O95359 2948 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 TRIM64CA6NLI5 447 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 ANXA2P2A6NMY6 339 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 MLNRO43193 412 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 CD2P06729 351 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 ZNF20P17024 532 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 MZT1Q08AG7 82 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 CLVS2Q5SYC1 327 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 LIPKQ5VXJ0 399 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 TMEM42Q69YG0 159 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 KCTD8Q6ZWB6 473 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 ZCCHC24Q8N2G6 241 aaKnown RBP14.53□□□□□ -0.08
NUP88-210ENST00000574867 MS4A15Q8N5U1 240 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 OR10AD1Q8NGE0 317 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 CHST5Q9GZS9 411 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 EGLN1Q9GZT9 426 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 OCM2P0CE71 109 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 PSMA1P25786 263 aaKnown RBP14.53□□□□□ -0.08
NUP88-210ENST00000574867 PSMB9P28065 219 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 TNFAIP6P98066 277 aaPredicted RBP14.53□□□□□ -0.08
NUP88-210ENST00000574867 PRDX4Q13162 271 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 DEFB113Q30KQ7 82 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 ARMCX4Q5H9R4 360 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 ZDHHC23Q8IYP9 409 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 OR8S1Q8NH09 359 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 UBASH3BQ8TF42 649 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 PIGCQ92535 297 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 TECTBQ96PL2 329 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 BARX1Q9HBU1 254 aaPredicted RBP14.53□□□□□ -0.08
NUP88-210ENST00000574867 DECR2Q9NUI1 292 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 IL19Q9UHD0 177 aa14.53□□□□□ -0.08
NUP88-210ENST00000574867 TRBV5-5A0A0J9YX44 114 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 ANKRD61A6NGH8 418 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 ZNF850A8MQ14 1090 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 GATBO75879 557 aaKnown RBP14.52□□□□□ -0.09
NUP88-210ENST00000574867 HLA-DPB1P04440 258 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 PTH2RP49190 550 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 TESK1Q15569 626 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 TRAM1Q15629 374 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 NEDD8Q15843 81 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 TSTQ16762 297 aaKnown RBP14.52□□□□□ -0.09
NUP88-210ENST00000574867 Q499Y3 187 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 PHC2Q8IXK0 858 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 LRRC75A-AS1Q8N1F1 130 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 CELF2-AS1Q8N7Q2 184 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 SAP30LQ9HAJ7 183 aa14.52□□□□□ -0.09
NUP88-210ENST00000574867 MAGEA13PA6NCF6 341 aa14.51□□□□□ -0.09
NUP88-210ENST00000574867 LMX1BO60663 402 aa14.51□□□□□ -0.09
NUP88-210ENST00000574867 SERPINA3P01011 423 aa14.51□□□□□ -0.09
NUP88-210ENST00000574867 NRASP01111 189 aa14.51□□□□□ -0.09
NUP88-210ENST00000574867 MAGEB1P43366 347 aa14.51□□□□□ -0.09
NUP88-210ENST00000574867 SRP9P49458 86 aaKnown RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms