RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 LCN2P80188 198 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 SSBP2P81877 361 aaPredicted RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 LGALS3BPQ08380 585 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 ZP4Q12836 540 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 NNATQ16517 81 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 TIGD3Q6B0B8 471 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 LEG1Q6P5S2 330 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 UNQ6126/PRO20091Q6UXV3 157 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 PRR22Q8IZ63 422 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 CLEC4FQ8N1N0 589 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 TMEM251Q8N6I4 163 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 OR7A2PQ8NGA2 310 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 OR4A4PQ8NGN8 299 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 FAM57AQ8TBR7 257 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 GPR151Q8TDV0 419 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 NUDCD2Q8WVJ2 157 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 RND1Q92730 232 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 TMBIM1Q969X1 311 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 ZBTB9Q96C00 473 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 PPP1R36Q96LQ0 422 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 RILPQ96NA2 401 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 MS4A4EQ96PG1 132 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 SORT1Q99523 831 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 DCTN5Q9BTE1 182 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 C1orf50Q9BV19 199 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 CHID1Q9BWS9 393 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 OSBPL11Q9BXB4 747 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 DGCR6LQ9BY27 220 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 PTGES2Q9H7Z7 377 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 METTL8Q9H825 291 aaKnown RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 ZDHHC11Q9H8X9 412 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 CHST11Q9NPF2 352 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 OR2S2Q9NQN1 319 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 DEPPQ9NTK1 212 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 INTS9Q9NV88 658 aaKnown RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 FLRT3Q9NZU0 649 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 MYEF2Q9P2K5 600 aaKnown RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 ZNF835Q9Y2P0 537 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 PCDHGB1Q9Y5G3 927 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 NCKAP5O14513 1909 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 NCOA6Q14686 2063 aaPredicted RBP5.2□□□□□ -1.58
VPS53-212ENST00000572259 NAV2Q8IVL1 2488 aa5.2□□□□□ -1.58
VPS53-212ENST00000572259 HEATR5AQ86XA9 2040 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ASH1LQ9NR48 2969 aaKnown RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 NOTCH2Q04721 2471 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 LRP5LA4QPB2 252 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 CENPBD1B2RD01 187 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 H3BNH8 94 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 OVOL3O00110 214 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 WDR1O75083 606 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ICOSLGO75144 302 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 UGT2B11O75310 529 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 KRT33AO76009 404 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 WISP2O76076 250 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 RPP14O95059 124 aaKnown RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 TMEM50AO95807 157 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 GAPDHP04406 335 aaKnown RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 IGF1P05019 195 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ACP2P11117 423 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 LAMP1P11279 417 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 GP1BBP13224 206 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 IDO1P14902 403 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 H2AFXP16104 143 aaPredicted RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 S100A3P33764 101 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 DIO3P55073 304 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ARPC4P59998 168 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 EEF1A1P68104 462 aaKnown RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 KLF5Q13887 457 aaPredicted RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 PTGR1Q14914 329 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ATXN7L3Q14CW9 347 aaPredicted RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 C3AR1Q16581 482 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 PHLDA2Q53GA4 152 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 DDI2Q5TDH0 399 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 EEF1A1P5Q5VTE0 462 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 C9orf135Q5VTT2 229 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ZNF691Q5VV52 312 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 FAM219BQ5XKK7 198 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 STUMQ69YW2 141 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ANKRD26P1Q6NSI1 321 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ENPP6Q6UWR7 440 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 HDDC2Q7Z4H3 204 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 DOLPP1Q86YN1 238 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 MED12LQ86YW9 2145 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 GBGT1Q8N5D6 347 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 COX18Q8N8Q8 333 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 LRTM2Q8N967 370 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 LRRC75AQ8NAA5 344 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 CYB561A3Q8NBI2 242 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 INO80EQ8NBZ0 244 aaPredicted RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 OR4K17Q8NGC6 315 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 OR4C15Q8NGM1 316 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 NEIL3Q8TAT5 605 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 ENKURQ8TC29 256 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 SFXN5Q8TD22 340 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 PHF10Q8WUB8 498 aaKnown RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 CAPSLQ8WWF8 208 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 HGDQ93099 445 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 TESCQ96BS2 214 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 DOCK7Q96N67 2140 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 STACQ99469 402 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms