RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TACSTD2P09758 323 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 FAHP16930 419 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 TNFSF4P23510 183 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 DCKP27707 260 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 MPPED2Q15777 294 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 AVPI1Q5T686 147 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 XAF1Q6GPH4 301 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 FDX2Q6P4F2 183 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 AHSA2Q719I0 299 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 KCTD20Q7Z5Y7 419 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 WDR86Q86TI4 376 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 SYS1Q8N2H4 156 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 TMEM80Q96HE8 168 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 C18orf12Q96KH6 178 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 GCM1Q9NP62 436 aa16.51■□□□□ 0.23
CLN3-225ENST00000566824 ANKRD30BLA7E2S9 258 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 ZNF850A8MQ14 1090 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 NDUFS8O00217 210 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 SLC1A7O00341 560 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 GMDSO60547 372 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 PIPP12273 146 aaPredicted RBP16.5■□□□□ 0.23
CLN3-225ENST00000566824 SLC25A16P16260 332 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 C21orf33P30042 268 aaPredicted RBP16.5■□□□□ 0.23
CLN3-225ENST00000566824 CD200P41217 278 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 GTF2A1P52655 376 aaPredicted RBP16.5■□□□□ 0.23
CLN3-225ENST00000566824 ACTA2P62736 377 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 ACTG2P63267 376 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 PRDX4Q13162 271 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 MOGAT3Q86VF5 341 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 OR14K1Q8NGZ2 314 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 OR10AC1Q8NH08 325 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 CNBD2Q96M20 576 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 PAPOLGQ9BWT3 736 aaKnown RBP16.5■□□□□ 0.23
CLN3-225ENST00000566824 GSX1Q9H4S2 264 aaPredicted RBP16.5■□□□□ 0.23
CLN3-225ENST00000566824 ZNF391Q9UJN7 358 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 V9GYS6 101 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 ABCA1O95477 2261 aa16.5■□□□□ 0.23
CLN3-225ENST00000566824 LRP5LA4QPB2 252 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 EFCAB10A6NFE3 127 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 OR4C45A6NMZ5 311 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 PPIHO43447 177 aaKnown RBP16.49■□□□□ 0.23
CLN3-225ENST00000566824 LALBAP00709 142 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 CST4P01036 141 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 HTR1AP08908 422 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 CCL1P22362 96 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 IL2RGP31785 369 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 MAP2K3P46734 347 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 HSPA13P48723 471 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 Q6ZSR3 168 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 ZNF485Q8NCK3 441 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 CSNK2A3Q8NEV1 391 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 PIGCQ92535 297 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 NARFLQ9H6Q4 476 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 UFSP2Q9NUQ7 469 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 CNOT2Q9NZN8 540 aaKnown RBP16.49■□□□□ 0.23
CLN3-225ENST00000566824 PPP1R3CQ9UQK1 317 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 PIGLQ9Y2B2 252 aa16.49■□□□□ 0.23
CLN3-225ENST00000566824 EXOSC1Q9Y3B2 195 aaKnown RBP16.49■□□□□ 0.23
CLN3-225ENST00000566824 SIRT4Q9Y6E7 314 aaPredicted RBP16.49■□□□□ 0.23
CLN3-225ENST00000566824 LOC107986453A0A1B0GWG9 222 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 IRGMA1A4Y4 181 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 DHRS3O75911 302 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 INHBBP09529 407 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 THBS2P35442 1172 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 GPR6P46095 362 aaPredicted RBP16.48■□□□□ 0.23
CLN3-225ENST00000566824 SRP9P49458 86 aaKnown RBP16.48■□□□□ 0.23
CLN3-225ENST00000566824 KRTAP1-1Q07627 177 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 HFEQ30201 348 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 KRT74Q7RTS7 529 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 LURAP1LQ8IV03 231 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 SEMA6DQ8NFY4 1073 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 HPSE2Q8WWQ2 592 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 ITPKCQ96DU7 683 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 SLC22A4Q9H015 551 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 TMEM106BQ9NUM4 274 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 UBAP1Q9NZ09 502 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 RAB26Q9ULW5 256 aa16.48■□□□□ 0.23
CLN3-225ENST00000566824 ZNF816-ZNF321PA0A0X1KG74 233 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 PTGES3LE9PB15 166 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 C3orf80F5H4A9 247 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 ZNF205O95201 554 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 PTBP3O95758 552 aaKnown RBP16.47■□□□□ 0.23
CLN3-225ENST00000566824 CYB5R3P00387 301 aaPredicted RBP16.47■□□□□ 0.23
CLN3-225ENST00000566824 GRPP07492 148 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 TNFRSF1AP19438 455 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 USF1P22415 310 aaPredicted RBP16.47■□□□□ 0.23
CLN3-225ENST00000566824 TMEM33P57088 247 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 LOXL1Q08397 574 aaPredicted RBP16.47■□□□□ 0.23
CLN3-225ENST00000566824 RIPPLY1Q0D2K3 151 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 ALKBH1Q13686 389 aaKnown RBP16.47■□□□□ 0.23
CLN3-225ENST00000566824 FAM201AQ5SY85 155 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 ZNF826PQ6ZT77 177 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 DOK3Q7L591 496 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 KLBQ86Z14 1044 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 C11orf53Q8IXP5 236 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 ZNF540Q8NDQ6 660 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 OR51A4Q8NGJ6 313 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 GATAD2BQ8WXI9 593 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 OR5P3Q8WZ94 311 aa16.47■□□□□ 0.23
CLN3-225ENST00000566824 ZNF184Q99676 751 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms