RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 HRH4Q9H3N8 390 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 ZNF304Q9HCX3 659 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 SLC22A11Q9NSA0 550 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 KPTNQ9Y664 436 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 FREM3P0C091 2139 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 C5orf42Q9H799 3197 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 IGKV1D-43A0A0B4J1Z2 117 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 MEX3AA1L020 520 aaKnown RBP14.41□□□□□ -0.1
SHMT2-232ENST00000557487 M0R296 226 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 ADAP1O75689 374 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 S100A8P05109 93 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 FCGR3AP08637 254 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 GIMD1P0DJR0 217 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 NME1P15531 152 aaKnown RBP14.41□□□□□ -0.1
SHMT2-232ENST00000557487 IL11P20809 199 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 ALDH3B1P43353 468 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 ANKRD55Q3KP44 614 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 DOK3Q7L591 496 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 OR10S1Q8NGN2 331 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 SLC39A7Q92504 469 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 MRPL13Q9BYD1 178 aaKnown RBP14.41□□□□□ -0.1
SHMT2-232ENST00000557487 C1orf123Q9NWV4 160 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 VCANP13611 3396 aa14.41□□□□□ -0.1
SHMT2-232ENST00000557487 LIPT2A6NK58 231 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 VSTM2BA6NLU5 285 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 SOCS1O15524 211 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 KCNAB3O43448 404 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 MED6O75586 246 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 SFTA3P0C7M3 94 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 PPM1FP49593 454 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-232ENST00000557487 RAB32Q13637 225 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 ARFRP1Q13795 201 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 OPN5Q6U736 354 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 TMPPEQ6ZT21 453 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 PNLDC1Q8NA58 520 aaKnown RBP14.4□□□□□ -0.1
SHMT2-232ENST00000557487 PLPP5Q8NEB5 264 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 LYPD6BQ8NI32 183 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 OR51E1Q8TCB6 317 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 FOXQ1Q9C009 403 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 OR10A2Q9H208 303 aa14.4□□□□□ -0.1
SHMT2-232ENST00000557487 C14orf166Q9Y224 244 aaKnown RBP14.4□□□□□ -0.1
SHMT2-232ENST00000557487 COLCA2A8K830 154 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 SERPINE3A8MV23 424 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 PRR33A8MZF0 331 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 RPS2P15880 293 aaKnown RBP14.39□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF84P51523 738 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 BIDP55957 195 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 TMEM50BP56557 158 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 SMCO1Q147U7 214 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 SWI5Q1ZZU3 235 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 AADACL3Q5VUY0 350 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 TMEM268Q5VZI3 342 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 TMEM104Q8NE00 496 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 OR2I1PQ8NGU4 316 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 OR13G1Q8NGZ3 307 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 SSC4DQ8WTU2 575 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-232ENST00000557487 CNTNAP3Q9BZ76 1288 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 TMEM231Q9H6L2 316 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 SERINC1Q9NRX5 453 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 MED29Q9NX70 200 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 LRP3O75074 770 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 FARS2O95363 451 aaKnown RBP14.39□□□□□ -0.11
SHMT2-232ENST00000557487 HCKP08631 526 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 SMIM6P0DI80 62 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 HKR1P10072 659 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 PRF1P14222 555 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 BCKDHBP21953 392 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 MSX1P28360 303 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 ARL4DP49703 201 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 FAM3AP98173 230 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 KCNMB1Q16558 191 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 ABHD12BQ7Z5M8 362 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-232ENST00000557487 ZC3H10Q96K80 434 aaKnown RBP14.39□□□□□ -0.11
SHMT2-232ENST00000557487 ARL5BQ96KC2 179 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 OR10C1Q96KK4 312 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 TUBA4BQ9H853 241 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 OR2S2Q9NQN1 319 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 SUSD2Q9UGT4 822 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 CYP8B1Q9UNU6 501 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 POLR1DQ9Y2S0 133 aa14.39□□□□□ -0.11
SHMT2-232ENST00000557487 F5P12259 2224 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 IFNA2P01563 188 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 IGHG1P01857 330 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 RBMXP38159 391 aaKnown RBP14.38□□□□□ -0.11
SHMT2-232ENST00000557487 LPAR6P43657 344 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 OR3A4PP47883 348 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 P2RY4P51582 365 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 GRB2P62993 217 aaKnown RBP14.38□□□□□ -0.11
SHMT2-232ENST00000557487 CSNK2A1P68400 391 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-232ENST00000557487 SLC25A53Q5H9E4 307 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 CCDC54Q8NEL0 328 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 CSNK2A3Q8NEV1 391 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 NOXO1Q8NFA2 376 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 ARHGAP5-AS1Q96IT6 56 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 MRGPRX4Q96LA9 322 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 SULT4A1Q9BR01 284 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 PLEKHA2Q9HB19 425 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 PPP4R1LQ9P1A2 415 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 TIMM10BQ9Y5J6 103 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms