RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 GPR132Q9UNW8 380 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 FBXO7Q9Y3I1 522 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 LOC390937A0A1W2PQ73 354 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 A0A1W2PQF6 199 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 PRSS37A4D1T9 235 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 H3BML4 177 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 AP4M1O00189 453 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 CLPSP04118 112 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 NDUFB7P17568 137 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 GPR3P46089 330 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 DNASE1L1P49184 302 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 SULT1A2P50226 295 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 P2RY4P51582 365 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 CLDN6P56747 220 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM128Q5BJH2 165 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 C1orf100Q5SVJ3 147 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF615Q8N8J6 731 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 POC1AQ8NBT0 407 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF248Q8NDW4 579 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 OR13G1Q8NGZ3 307 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 TERB2Q8NHR7 220 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 PIGQQ9BRB3 760 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 METTL8Q9H825 291 aaKnown RBP4.3□□□□□ -1.72
LIMA1-214ENST00000552783 WFDC1Q9HC57 220 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 POLE3Q9NRF9 147 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 FBXL17Q9UF56 701 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 VDAC3Q9Y277 283 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 FLVCR1Q9Y5Y0 555 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 PCDH15Q96QU1 1955 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 PTPRSQ13332 1948 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 ASPMQ8IZT6 3477 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 IGKV1D-8A0A087WSZ0 117 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 IGHV3-20A0A0C4DH32 117 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 C5orf63A6NC05 138 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 TNFSF14O43557 240 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 SFT2D2O95562 160 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 KNG1P01042 644 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 IFNA6P05013 189 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 LYL1P12980 280 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 PAX6P26367 422 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 RABIFP47224 123 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 CX3CR1P49238 355 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM33P57088 247 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 RAB38P57729 211 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 RPS23P62266 143 aaKnown RBP4.3□□□□□ -1.72
LIMA1-214ENST00000552783 ROM1Q03395 351 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF616Q08AN1 781 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 PLCXD2Q0VAA5 305 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 TOMM20Q15388 145 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 RNF212Q495C1 297 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 WBP2NLQ6ICG8 309 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 DCXRQ7Z4W1 244 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 DTX1Q86Y01 620 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 C19orf47Q8N9M1 422 aaKnown RBP4.3□□□□□ -1.72
LIMA1-214ENST00000552783 WDSUB1Q8N9V3 476 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-214ENST00000552783 TSLPQ969D9 159 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 SLAMF9Q96A28 289 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 SAT2Q96F10 170 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-214ENST00000552783 YPEL4Q96NS1 127 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 SLCO5A1Q9H2Y9 848 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 ELL3Q9HB65 397 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-214ENST00000552783 CKLFQ9UBR5 152 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 COPS7AQ9UBW8 275 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 CA14Q9ULX7 337 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 STARD10Q9Y365 291 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 WIF1Q9Y5W5 379 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 URGCP-MRPS24S4R325 110 aa4.3□□□□□ -1.72
LIMA1-214ENST00000552783 METTL21EPA6NDL7 271 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 H7C1Q1 480 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GATCO43716 136 aaKnown RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 SLC34A2O95436 690 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 IFNA2P01563 188 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 BGLAPP02818 100 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CD2P06729 351 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CXCL1P09341 107 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 SLC2A1P11166 492 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 PPP1CCP36873 323 aaKnown RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 SNCAP37840 140 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 OR3A4PP47883 348 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CSNK1EP49674 416 aaKnown RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CCL20P78556 96 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 SLC18B1Q6NT16 456 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GALNTL5Q7Z4T8 443 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ANGPTL5Q86XS5 388 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM156Q8N614 296 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 NAXEQ8NCW5 288 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 OR10H5Q8NGA6 315 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 LYPD6BQ8NI32 183 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CD300LFQ8TDQ1 290 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 LIPHQ8WWY8 451 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 MR1Q95460 341 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ARL5BQ96KC2 179 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 C1orf147Q96MC9 270 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TAAR9Q96RI9 348 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ABHD14AQ9BUJ0 271 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ST6GALNAC5Q9BVH7 336 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 EIF5A2Q9GZV4 153 aaKnown RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TOLLIPQ9H0E2 274 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 NXF5Q9H1B4 397 aaKnown RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms