RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TLNRD1Q9H1K6 362 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 DCLRE1BQ9H816 532 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 MOB1AQ9H8S9 216 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 PATZ1Q9HBE1 687 aaKnown RBP10.89□□□□□ -0.67
VPS28-216ENST00000533806 GPR84Q9NQS5 396 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 NKX1-2Q9UD57 310 aaPredicted RBP10.89□□□□□ -0.67
VPS28-216ENST00000533806 OR52A1Q9UKL2 312 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 MPC1Q9Y5U8 109 aa10.89□□□□□ -0.67
VPS28-216ENST00000533806 DYSFO75923 2080 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 LRRC30A6NM36 301 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 LOC110117498-PIK3R3F6TDL0 507 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 TNFRSF13BO14836 293 aaPredicted RBP10.88□□□□□ -0.67
VPS28-216ENST00000533806 PLPP2O43688 288 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 KRT8P05787 483 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 DBTP11182 482 aaKnown RBP10.88□□□□□ -0.67
VPS28-216ENST00000533806 CCL1P22362 96 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 ATP6V1E1P36543 226 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 CFHR2P36980 270 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 MDH2P40926 338 aaKnown RBP10.88□□□□□ -0.67
VPS28-216ENST00000533806 HOXA4Q00056 320 aaPredicted RBP10.88□□□□□ -0.67
VPS28-216ENST00000533806 ZNF91Q05481 1191 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 ZNF154Q13106 437 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 SNCBQ16143 134 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 CDONQ4KMG0 1287 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 FAM201AQ5SY85 155 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 ZNF691Q5VV52 312 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 KCTD20Q7Z5Y7 419 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 CATSPERDQ86XM0 798 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 OR5P3Q8WZ94 311 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 TMEM186Q96B77 213 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 RAB39BQ96DA2 213 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 GAL3ST1Q99999 423 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 FN3KRPQ9HA64 309 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 UFSP2Q9NUQ7 469 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 C14orf119Q9NWQ9 140 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 CDC42EP3Q9UKI2 254 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 KCNS2Q9ULS6 477 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 SLC22A13Q9Y226 551 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 POLR3KQ9Y2Y1 108 aaPredicted RBP10.88□□□□□ -0.67
VPS28-216ENST00000533806 SNX5Q9Y5X3 404 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 V9GYS6 101 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 ATRQ13535 2644 aa10.88□□□□□ -0.67
VPS28-216ENST00000533806 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.87□□□□□ -0.67
VPS28-216ENST00000533806 SNTNA6NMZ2 147 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ZNF850A8MQ14 1090 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 IGHA1P01876 353 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 WNT2P09544 360 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 CPT2P23786 658 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ZFP36P26651 326 aaKnown RBP10.87□□□□□ -0.67
VPS28-216ENST00000533806 THBS2P35442 1172 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 MAP2K3P46734 347 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ACTC1P68032 377 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ACTA1P68133 377 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 MZT1Q08AG7 82 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 PRDX4Q13162 271 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ZNF404Q494X3 552 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 FAM120AOSQ5T036 256 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ZBTB37Q5TC79 503 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 TMEM42Q69YG0 159 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 FDX2Q6P4F2 183 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ZNF826PQ6ZT77 177 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 PRIMA1Q86XR5 153 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 EGFL6Q8IUX8 553 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 C1orf87Q8N0U7 546 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 PRSS35Q8N3Z0 413 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 FTMTQ8N4E7 242 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 SPICQ8N5J4 248 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 GCSAMQ8N6F7 178 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 ACBD7Q8N6N7 88 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 YIPF7Q8N8F6 280 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 SEMA6DQ8NFY4 1073 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 OR1M1Q8NGA1 313 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 OR14K1Q8NGZ2 314 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 OR51F2Q8NH61 342 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 HPSE2Q8WWQ2 592 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 Q96MT0 163 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 TMEM246Q9BRR3 403 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 PAPOLGQ9BWT3 736 aaKnown RBP10.87□□□□□ -0.67
VPS28-216ENST00000533806 AMBNQ9NP70 447 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 HIF1ANQ9NWT6 349 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 RNF7Q9UBF6 113 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 MYRFQ9Y2G1 1151 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 PCDHGB1Q9Y5G3 927 aa10.87□□□□□ -0.67
VPS28-216ENST00000533806 FBN1P35555 2871 aaKnown RBP10.87□□□□□ -0.67
VPS28-216ENST00000533806 PPIAL4EA0A075B759 164 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 TRAV20A0A0B4J274 112 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 ZNF816-ZNF321PA0A0X1KG74 233 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 ISPDA4D126 451 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 DHRS7CA6NNS2 312 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 CEACAM18A8MTB9 384 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 PPIAL4DF5H284 164 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 DHRS3O75911 302 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 RPP14O95059 124 aaKnown RBP10.86□□□□□ -0.67
VPS28-216ENST00000533806 ZNF205O95201 554 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 CLIC3O95833 236 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 GRPP07492 148 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 PPIAL4FP0DN26 164 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 GNALP38405 381 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 IL5RAQ01344 420 aa10.86□□□□□ -0.67
VPS28-216ENST00000533806 RAB40BQ12829 278 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms