RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TIMM29Q9BSF4 260 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 ANKRD60Q9BZ19 345 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 NEUROG2Q9H2A3 272 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 TMEM165Q9HC07 324 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 TMEM9BQ9NQ34 198 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 MTCH1Q9NZJ7 389 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 GCN1Q92616 2671 aaKnown RBP1.96□□□□□ -2.1
CD44-233ENST00000531141 DNAH12Q6ZR08 3092 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 ITGB4P16144 1822 aa1.96□□□□□ -2.1
CD44-233ENST00000531141 MRC1P22897 1456 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 SMCO2A6NFE2 343 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 SMKR1H3BMG3 65 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 UBXN8O00124 270 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 NVLO15381 856 aaKnown RBP1.95□□□□□ -2.1
CD44-233ENST00000531141 KRT14P02533 472 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 EIF4EP06730 217 aaKnown RBP1.95□□□□□ -2.1
CD44-233ENST00000531141 CDKN2DP55273 166 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 EIF3EP60228 445 aaKnown RBP1.95□□□□□ -2.1
CD44-233ENST00000531141 RCAN2Q14206 197 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 IGFBP7Q16270 282 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 PSMD5Q16401 504 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 MPV17L2Q567V2 206 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 SOHLH1Q5JUK2 328 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 CMC1Q7Z7K0 106 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 CALHM3Q86XJ0 350 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 GTPBP8Q8N3Z3 284 aaPredicted RBP1.95□□□□□ -2.1
CD44-233ENST00000531141 NPWQ8N729 165 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 LRRC52Q8N7C0 313 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 OR52E2Q8NGJ4 325 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 OR13G1Q8NGZ3 307 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 NUBPLQ8TB37 319 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 APH1BQ8WW43 257 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 CAPSLQ8WWF8 208 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 EEF1AKMT3Q96AZ1 226 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 RSG1Q9BU20 258 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 EDA2RQ9HAV5 297 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 WFDC1Q9HC57 220 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 FBXO6Q9NRD1 293 aaPredicted RBP1.95□□□□□ -2.1
CD44-233ENST00000531141 DMDP11532 3685 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 NCOR2Q9Y618 2525 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 FAM186AA6NE01 2351 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 ANKRD12Q6UB98 2062 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 RAB3GAP2Q9H2M9 1393 aa1.95□□□□□ -2.1
CD44-233ENST00000531141 NRXN2Q9P2S2 1712 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 BPTFQ12830 3046 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 MAP1BP46821 2468 aaKnown RBP1.94□□□□□ -2.1
CD44-233ENST00000531141 TRIOO75962 3097 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 NCBP2LA6PVI3 153 aaKnown RBP1.94□□□□□ -2.1
CD44-233ENST00000531141 PDZK1P1A8MUH7 402 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 H7C417 338 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 CLDN11O75508 207 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 FTH1P02794 183 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 PABPC4LP0CB38 370 aaKnown RBP1.94□□□□□ -2.1
CD44-233ENST00000531141 ME2P23368 584 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 KIR3DL2P43630 455 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 TAS2R31P59538 309 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 HMGN5P82970 282 aaKnown RBP1.94□□□□□ -2.1
CD44-233ENST00000531141 ZNF616Q08AN1 781 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 CHRNA6Q15825 494 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 RNASE13Q5GAN3 156 aaKnown RBP1.94□□□□□ -2.1
CD44-233ENST00000531141 ADNP2Q6IQ32 1131 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 TTC23LQ6PF05 361 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 MBOAT2Q6ZWT7 520 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 MRPL55Q7Z7F7 128 aaKnown RBP1.94□□□□□ -2.1
CD44-233ENST00000531141 NKAIN4Q8IVV8 208 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 CMTM1Q8IZ96 169 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 OR4C5Q8NGB2 326 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 CCDC77Q9BR77 488 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 C11orf49Q9H6J7 331 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 SLC38A10Q9HBR0 1119 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 MTFP1Q9UDX5 166 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 PITPNC1Q9UKF7 332 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 LTN1O94822 1766 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 KDM3BQ7LBC6 1761 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 REV3LO60673 3130 aa1.94□□□□□ -2.1
CD44-233ENST00000531141 COL27A1Q8IZC6 1860 aaPredicted RBP1.94□□□□□ -2.1
CD44-233ENST00000531141 ALPK3Q96L96 1907 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 COL4A5P29400 1685 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 NFAT5O94916 1531 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 IGHV7-4-1A0A0J9YVY3 117 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 A6NDN8 102 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 EIF4E2O60573 245 aaKnown RBP1.93□□□□□ -2.1
CD44-233ENST00000531141 IGHV3-11P01762 117 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 RPS12P25398 132 aaKnown RBP1.93□□□□□ -2.1
CD44-233ENST00000531141 PBLDP30039 288 aaPredicted RBP1.93□□□□□ -2.1
CD44-233ENST00000531141 GFERP55789 205 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 SELENBP1Q13228 472 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 TRAM2Q15035 370 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 PRAMEF20Q5VT98 475 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 H3F3CQ6NXT2 135 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 NPSR1Q6W5P4 371 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 ZYG11AQ6WRX3 759 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 FAM71AQ8IYT1 594 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 TMEM256Q8N2U0 113 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 SPANXA2-OT1Q8N9U9 137 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 ST20-AS1Q8NBB2 130 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 OR11H7Q8NGC8 314 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 OR5K2Q8NHB8 316 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 OR51E1Q8TCB6 317 aa1.93□□□□□ -2.1
CD44-233ENST00000531141 ECHDC3Q96DC8 303 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms