RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ARR3P36575 388 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 ALDH3B1P43353 468 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 RAG2P55895 527 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 FAM3AP98173 230 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 ZNF92Q03936 586 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 GUSBP1Q15486 140 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 PCGF3Q3KNV8 242 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 ZNF260Q3ZCT1 412 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 Q6ZS92 163 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 ZNF101Q8IZC7 436 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 TMEM104Q8NE00 496 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 BCL2L2Q92843 193 aaPredicted RBP17.98■□□□□ 0.47
VPS28-209ENST00000528142 RNF170Q96K19 258 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 TRIB1Q96RU8 372 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 GPER1Q99527 375 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 NUDT16L1Q9BRJ7 211 aaKnown RBP17.98■□□□□ 0.47
VPS28-209ENST00000528142 LPLP06858 475 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 CSF1P09603 554 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 UBBP0CG47 229 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 NAT2P11245 290 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 CD79AP11912 226 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 PTGFRP43088 359 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 GSK3AP49840 483 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 TBRG1Q3YBR2 411 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 TMEM42Q69YG0 159 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 KCNG3Q8TAE7 436 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 NPRL2Q8WTW4 380 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 LPAR5Q9H1C0 372 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 ELF5Q9UKW6 265 aaPredicted RBP17.98■□□□□ 0.47
VPS28-209ENST00000528142 RTTNQ86VV8 2226 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 MGAQ8IWI9 3026 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 FREM1Q5H8C1 2179 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 C7orf66A4D0T2 115 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 XRCC2O43543 280 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 CDC14BO60729 498 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 SCGNO76038 276 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 DHFRP00374 187 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 PSMB1P20618 241 aaKnown RBP17.97■□□□□ 0.47
VPS28-209ENST00000528142 RAB1AP62820 205 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 OR8B8Q15620 311 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 AKAP1Q92667 903 aaKnown RBP eCLIP17.97■□□□□ 0.47
VPS28-209ENST00000528142 CMBLQ96DG6 245 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 ZMAT3Q9HA38 289 aaKnown RBP17.97■□□□□ 0.47
VPS28-209ENST00000528142 GPR173Q9NS66 373 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 GHRLQ9UBU3 117 aa17.97■□□□□ 0.47
VPS28-209ENST00000528142 MEIS3P1A6NDR6 274 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 MELTFP08582 738 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 STOMP27105 288 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 PRSS12P56730 875 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 ATAD3CQ5T2N8 411 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 FAAP20Q6NZ36 180 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 TFAP2EQ6VUC0 442 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 C1QL2Q7Z5L3 287 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 DPPA2Q7Z7J5 298 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 SPACA3Q8IXA5 215 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 PNLDC1Q8NA58 520 aaKnown RBP17.96■□□□□ 0.47
VPS28-209ENST00000528142 OR56B4Q8NH76 319 aa17.96■□□□□ 0.47
VPS28-209ENST00000528142 A0A0A6YYD4 124 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 A0A0A6YYJ9 748 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 CHRM2P08172 466 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 H2AFB2P0C5Z0 115 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 EIF2S3P41091 472 aaKnown RBP17.95■□□□□ 0.46
VPS28-209ENST00000528142 HIKESHIQ53FT3 197 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 TMEM53Q6P2H8 277 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 FAM214BQ7L5A3 538 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 ZNF584Q8IVC4 421 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 OR5M9Q8NGP3 310 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 OR10R2Q8NGX6 335 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 PIGTQ969N2 578 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 SPSB1Q96BD6 273 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 POM121L2Q96KW2 1035 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 NICN1Q9BSH3 213 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 ACTR6Q9GZN1 396 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 GHITMQ9H3K2 345 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 ZNF221Q9UK13 617 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 TMEM235A6NFC5 223 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 K7EM74 188 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 MPIG6BO95866 241 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 VEGFCP49767 419 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 ACTBP60709 375 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 ACTG1P63261 375 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 CDNFQ49AH0 187 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 CLVS2Q5SYC1 327 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 Q6ZTK2 550 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 GCNT2Q8N0V5 402 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 OR5D18Q8NGL1 313 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 WNT2BQ93097 391 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 C20orf85Q9H1P6 137 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 BANF2Q9H503 90 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 MCUBQ9NWR8 336 aa17.95■□□□□ 0.46
VPS28-209ENST00000528142 ACACAQ13085 2346 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 TNRC6AQ8NDV7 1962 aaKnown RBP17.94■□□□□ 0.46
VPS28-209ENST00000528142 A0A1W2PP11 408 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 C5orf49A4QMS7 147 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 A8MV72 311 aaPredicted RBP17.94■□□□□ 0.46
VPS28-209ENST00000528142 CCL2P13500 99 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 RRAS2P62070 204 aaPredicted RBP17.94■□□□□ 0.46
VPS28-209ENST00000528142 GSG1Q2KHT4 349 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 CDH24Q86UP0 819 aa17.94■□□□□ 0.46
VPS28-209ENST00000528142 RBMXL3Q8N7X1 1067 aaKnown RBP17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms