RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 OR4C15Q8NGM1 316 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 OR52J3Q8NH60 311 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 PPP1R35Q8TAP8 253 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 TBC1D15Q8TC07 691 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 PYDC1Q8WXC3 89 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 ZNF799Q96GE5 643 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 CCL13Q99616 98 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 FN3KRPQ9HA64 309 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 TCF7L1Q9HCS4 588 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 S100A14Q9HCY8 104 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 DNAJB9Q9UBS3 223 aa11.7□□□□□ -0.54
CPSF1-201ENST00000526271 ZNF816-ZNF321PA0A0X1KG74 233 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 A0A1W2PRD5 423 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 A0A1W2PRF3 423 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 A0A1W2PRM7 423 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 TVP23AA6NH52 213 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 GADD45GO95257 159 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 GRPP07492 148 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 SPIBQ01892 262 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 EGR3Q06889 387 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 GK3PQ14409 553 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 ATP6AP1Q15904 470 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 PCK2Q16822 640 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 CDONQ4KMG0 1287 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 WDR38Q5JTN6 314 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 SAMD5Q5TGI4 173 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 MRPL21Q7Z2W9 205 aaKnown RBP11.69□□□□□ -0.54
CPSF1-201ENST00000526271 PNLDC1Q8NA58 520 aaKnown RBP11.69□□□□□ -0.54
CPSF1-201ENST00000526271 FANK1Q8TC84 345 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 SPRYD4Q8WW59 207 aaPredicted RBP11.69□□□□□ -0.54
CPSF1-201ENST00000526271 UBE2FQ969M7 185 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 SIRT7Q9NRC8 400 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 VNN3Q9NY84 501 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 ZNF319Q9P2F9 582 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 DNAJB11Q9UBS4 358 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 LYVE1Q9Y5Y7 322 aa11.69□□□□□ -0.54
CPSF1-201ENST00000526271 TRAV38-1A0A0B4J264 116 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 TNFRSF11BO00300 401 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 FCGR1AP12314 374 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 FASP25445 335 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 PAX6P26367 422 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 GSSP48637 474 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 ECH1Q13011 328 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 SLC35F1Q5T1Q4 408 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 SLC35E4Q6ICL7 350 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 CRIP3Q6Q6R5 217 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 METAP1DQ6UB28 335 aaPredicted RBP11.68□□□□□ -0.54
CPSF1-201ENST00000526271 WDR82Q6UXN9 313 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 PRSS45Q7RTY3 260 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 CYB561A3Q8NBI2 242 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 PLPP7Q8NBV4 271 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 OR51L1Q8NGJ5 315 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 OR8D4Q8NGM9 314 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 LRTOMTQ8WZ04 291 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 ST8SIA4Q92187 359 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 SPSB4Q96A44 273 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 CNTD2Q9H8S5 307 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 REEP1Q9H902 201 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 MRPL15Q9P015 296 aaKnown RBP11.68□□□□□ -0.54
CPSF1-201ENST00000526271 VPREB3Q9UKI3 123 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 FOXJ3Q9UPW0 622 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 KPTNQ9Y664 436 aa11.68□□□□□ -0.54
CPSF1-201ENST00000526271 GNGT2O14610 69 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 GMDSO60547 372 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 TGM4P49221 684 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 TPTEP56180 551 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 PPP1R8Q12972 351 aaKnown RBP11.67□□□□□ -0.54
CPSF1-201ENST00000526271 FBLN7Q53RD9 439 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 DNM1P34Q6PK57 102 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 TMEM179BQ7Z7N9 219 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 LINC00471Q8N535 108 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 SCCPDHQ8NBX0 429 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 NRBF2Q96F24 287 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 EGLN3Q9H6Z9 239 aa11.67□□□□□ -0.54
CPSF1-201ENST00000526271 SAMHD1Q9Y3Z3 626 aaKnown RBP11.67□□□□□ -0.54
CPSF1-201ENST00000526271 BHLHE40O14503 412 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 SLC6A6P31641 620 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 PRKXP51817 358 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 EFNB2P52799 333 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 FAM3AP98173 230 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.66□□□□□ -0.54
CPSF1-201ENST00000526271 MALLQ13021 153 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 MICAQ29983 383 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 ZNF770Q6IQ21 691 aaPredicted RBP11.66□□□□□ -0.54
CPSF1-201ENST00000526271 LNX2Q8N448 690 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 LRRC29Q8WV35 223 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 STMN2Q93045 179 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 SGK3Q96BR1 496 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 CENPNQ96H22 339 aaPredicted RBP11.66□□□□□ -0.54
CPSF1-201ENST00000526271 SLC22A4Q9H015 551 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 TLNRD1Q9H1K6 362 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 WDR13Q9H1Z4 485 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 KRCC1Q9NPI7 259 aaPredicted RBP11.66□□□□□ -0.54
CPSF1-201ENST00000526271 ZNF281Q9Y2X9 895 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 COMMD3-BMI1R4GMX3 469 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 U3KQV3 271 aa11.66□□□□□ -0.54
CPSF1-201ENST00000526271 A0A1B0GVI7 797 aa11.65□□□□□ -0.54
CPSF1-201ENST00000526271 GGT3PA6NGU5 568 aa11.65□□□□□ -0.54
CPSF1-201ENST00000526271 A6NLC8 198 aa11.65□□□□□ -0.54
CPSF1-201ENST00000526271 NPFFO15130 113 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms