RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 KITLGP21583 273 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 TUBG1P23258 451 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 RPL5P46777 297 aaKnown RBP13.07□□□□□ -0.32
LSM1-203ENST00000520755 EVX1P49640 407 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 FABP5Q01469 135 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 BLMHQ13867 455 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 CD200R1LQ6Q8B3 271 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 GPR148Q8TDV2 347 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 ORAI1Q96D31 301 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 HAVCR1Q96D42 359 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 MBD6Q96DN6 1003 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 ADAT3Q96EY9 351 aaPredicted RBP13.07□□□□□ -0.32
LSM1-203ENST00000520755 PERPQ96FX8 193 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 OR14A2Q96R54 314 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 VRK1Q99986 396 aaPredicted RBP13.07□□□□□ -0.32
LSM1-203ENST00000520755 PPP1R3EQ9H7J1 279 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 TUBG2Q9NRH3 451 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 PURGQ9UJV8 347 aaKnown RBP13.07□□□□□ -0.32
LSM1-203ENST00000520755 ITGB1BP2Q9UKP3 347 aa13.07□□□□□ -0.32
LSM1-203ENST00000520755 TRBV5-7A0A0A0MS05 114 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 A6NIN4 97 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 IQCF6A8MYZ5 107 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 PIN1P1O15428 100 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 GPX5O75715 221 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 NAT2P11245 290 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 CFL1P23528 166 aaKnown RBP13.06□□□□□ -0.32
LSM1-203ENST00000520755 GADD45AP24522 165 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 CRYBB2P43320 205 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 SOX2P48431 317 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 PTH2RP49190 550 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 Q499Y3 187 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 FAM27D1Q5T7N8 215 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 SLC16A12Q6ZSM3 486 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 SATL1Q86VE3 508 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 OR5AS1Q8N127 324 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 ZCCHC24Q8N2G6 241 aaKnown RBP13.06□□□□□ -0.32
LSM1-203ENST00000520755 BHLHE23Q8NDY6 225 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 OR13C3Q8NGS6 347 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 UBASH3BQ8TF42 649 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 TSEN15Q8WW01 171 aaKnown RBP13.06□□□□□ -0.32
LSM1-203ENST00000520755 GTF3AQ92664 365 aaKnown RBP13.06□□□□□ -0.32
LSM1-203ENST00000520755 DERL3Q96Q80 235 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 OR51E2Q9H255 320 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 PPIL3Q9H2H8 161 aaKnown RBP13.06□□□□□ -0.32
LSM1-203ENST00000520755 GPR160Q9UJ42 338 aa13.06□□□□□ -0.32
LSM1-203ENST00000520755 GGT3PA6NGU5 568 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 DHRS7CA6NNS2 312 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 ZNF879B4DU55 563 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 H7C417 338 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 GABRPO00591 440 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 NDUFS7O75251 213 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 RGS9O75916 674 aaPredicted RBP13.05□□□□□ -0.32
LSM1-203ENST00000520755 PPOXP50336 477 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 ATP5J2P56134 94 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 MOGQ16653 247 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 UNQ9370/PRO34162Q6UXP9 181 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 Q6ZR03 302 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 KRT74Q7RTS7 529 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 MS4A15Q8N5U1 240 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 SEMA6DQ8NFY4 1073 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 RPL3LQ92901 407 aaKnown RBP13.05□□□□□ -0.32
LSM1-203ENST00000520755 FUNDC2Q9BWH2 189 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 NAA50Q9GZZ1 169 aaKnown RBP13.05□□□□□ -0.32
LSM1-203ENST00000520755 TPK1Q9H3S4 243 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 ZNF275Q9NSD4 429 aaPredicted RBP13.05□□□□□ -0.32
LSM1-203ENST00000520755 ZNF701Q9NV72 531 aaPredicted RBP13.05□□□□□ -0.32
LSM1-203ENST00000520755 FBXO9Q9UK97 447 aaPredicted RBP13.05□□□□□ -0.32
LSM1-203ENST00000520755 STUB1Q9UNE7 303 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 PIGLQ9Y2B2 252 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 USF3Q68DE3 2245 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 CSMD1Q96PZ7 3565 aa13.05□□□□□ -0.32
LSM1-203ENST00000520755 TRDV1A0A1B0GX56 115 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 PLSCR5A0PG75 271 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 ZSCAN5BA6NJL1 495 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 OCM2P0CE71 109 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 PSMA1P25786 263 aaKnown RBP13.04□□□□□ -0.32
LSM1-203ENST00000520755 MAP2K3P46734 347 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 MMP15P51511 669 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 ART1P52961 327 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 TRAM1Q15629 374 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 ACSM3Q53FZ2 586 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 ZMAT1Q5H9K5 638 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 TMEM42Q69YG0 159 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 GPR141Q7Z602 305 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 CCDC54Q8NEL0 328 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 DVL3Q92997 716 aaPredicted RBP13.04□□□□□ -0.32
LSM1-203ENST00000520755 TMEM106AQ96A25 262 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 FGGYQ96C11 551 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 SORCS2Q96PQ0 1159 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 GSX2Q9BZM3 304 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 FGF23Q9GZV9 251 aaPredicted RBP13.04□□□□□ -0.32
LSM1-203ENST00000520755 MS4A5Q9H3V2 200 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 DHDHQ9UQ10 334 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 RHBDD3Q9Y3P4 386 aa13.04□□□□□ -0.32
LSM1-203ENST00000520755 ZNF816-ZNF321PA0A0X1KG74 233 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 A0A1B0GWJ7 208 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 A0A1W2PPK0 400 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 SHISA3A0PJX4 238 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 MLNRO43193 412 aa13.03□□□□□ -0.32
LSM1-203ENST00000520755 MTRF1O75570 445 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms