RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	SGCD	Q92629	289 aa		12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	CLPTM1L	Q96KA5	538 aa		12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	C7orf34	Q96L11	122 aa		12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	HOPX	Q9BPY8	73 aa	Predicted RBP	12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	DNTTIP1	Q9H147	329 aa		12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	RANBP3	Q9H6Z4	567 aa	Predicted RBP	12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	METTL8	Q9H825	291 aa	Known RBP	12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	RAB18	Q9NP72	206 aa		12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	NECAP2	Q9NVZ3	263 aa		12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	HAO2	Q9NYQ3	351 aa		12.86	□□□□□ -0.35
LMNA-223	ENST00000515459	TVP23A	A6NH52	213 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	CDIPT	O14735	213 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	PYCR1	P32322	319 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	SMIM11A	P58511	58 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	FAM3A	P98173	230 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	BLMH	Q13867	455 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	LY6E	Q16553	131 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	STUM	Q69YW2	141 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	SLC16A9	Q7RTY1	509 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	OR51G2	Q8NGK0	314 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	SLAMF6	Q96DU3	332 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	KCTD14	Q9BQ13	255 aa	Predicted RBP	12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	CENPM	Q9NSP4	180 aa		12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	SLC25A10	Q9UBX3	287 aa	Predicted RBP	12.85	□□□□□ -0.35
LMNA-223	ENST00000515459	SF3B6	Q9Y3B4	125 aa	Known RBP	12.85	□□□□□ -0.35
LMNA-223	ENST00000515459		A0A1W2PQ09	198 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	NKX6-3	A6NJ46	265 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	NDUFAB1	O14561	156 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	TBX1	O43435	398 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	GADD45G	O95257	159 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	VSIG10L2	P0DP72	767 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	PSKH1	P11801	424 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	SELL	P14151	372 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	TIGD6	Q17RP2	521 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	LRRC75B	Q2VPJ9	315 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	DTX3	Q8N9I9	347 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	CYB561A3	Q8NBI2	242 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	OR4S1	Q8NGB4	309 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	OR2T4	Q8NH00	348 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	ITPKC	Q96DU7	683 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	MED30	Q96HR3	178 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	TLNRD1	Q9H1K6	362 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	FGFR1OP2	Q9NVK5	253 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	ZNF391	Q9UJN7	358 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	SAMD4A	Q9UPU9	718 aa	Known RBP	12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	COMMD3-BMI1	R4GMX3	469 aa		12.84	□□□□□ -0.35
LMNA-223	ENST00000515459	ZNF878	C9JN71	531 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	SPARC	P09486	303 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	COX4I1	P13073	169 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	GNAL	P38405	381 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	IFNGR2	P38484	337 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	SLC15A1	P46059	708 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	GMFB	P60983	142 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	SPIB	Q01892	262 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	EMX1	Q04741	257 aa	Predicted RBP	12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	GLYAT	Q6IB77	296 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	C8orf82	Q6P1X6	216 aa	Predicted RBP	12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	CRIP3	Q6Q6R5	217 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	LYPD4	Q6UWN0	246 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	ZNF788	Q6ZQV5	615 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	LYG1	Q8N1E2	194 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	FAM86B1	Q8N7N1	296 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	OR51L1	Q8NGJ5	315 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	C17orf50	Q8WW18	174 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	ZNRF4	Q8WWF5	429 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	RORB	Q92753	470 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	SGK3	Q96BR1	496 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	DUS3L	Q96G46	650 aa	Known RBP	12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	REEP6	Q96HR9	211 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	DDO	Q99489	341 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	PAPOLG	Q9BWT3	736 aa	Known RBP	12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	NPFFR1	Q9GZQ6	430 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	MEGF9	Q9H1U4	602 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	WDR13	Q9H1Z4	485 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	SNTG1	Q9NSN8	517 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	DCAF13	Q9NV06	445 aa	Known RBP	12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	NBEAL2	Q6ZNJ1	2754 aa		12.83	□□□□□ -0.36
LMNA-223	ENST00000515459	ANXA2P2	A6NMY6	339 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	ANXA2	P07355	339 aa	Known RBP	12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	NDUFB7	P17568	137 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	POU1F1	P28069	291 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	GSS	P48637	474 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	CX3CR1	P49238	355 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	ENTPD1	P49961	510 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	CAV3	P56539	151 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	GRB2	P62993	217 aa	Known RBP	12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	IL5RA	Q01344	420 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	AANAT	Q16613	207 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	DGUOK	Q16854	277 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	NSUN5P1	Q3KNT7	163 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	HCP5	Q6MZN7	132 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	CGB2	Q6NT52	195 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	CSNK2A3	Q8NEV1	391 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	OR52L1	Q8NGH7	329 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	OR5D13	Q8NGL4	314 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	OR10Z1	Q8NGY1	313 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	GAFA1	Q96PS6	74 aa		12.82	□□□□□ -0.36
LMNA-223	ENST00000515459	RAB3IP	Q96QF0	476 aa	Predicted RBP	12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms