RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR2B8PP59922 312 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 MYBPHQ13203 477 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 IKZF1Q13422 519 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 PRSS54Q6PEW0 395 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 Q6ZS52 159 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 NANPQ8TBE9 248 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 RTN4IP1Q8WWV3 396 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 NIPSNAP3BQ9BS92 247 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 NELFAQ9H3P2 528 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 TNFSF18Q9UNG2 199 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 MRPS18BQ9Y676 258 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SMCO3A2RU48 225 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 MBTPS2O43462 519 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 OR2J2O76002 312 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 NXPH3O95157 252 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 FOLR1P15328 257 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 FKBP2P26885 142 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 GDF1P27539 372 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 NKX2-1P43699 371 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 OR3A4PP47883 348 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 KIAA0141Q14154 515 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 EIF2S3LQ2VIR3 472 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF658BQ4V348 819 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 TMEM255AQ5JRV8 349 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 CBLN2Q8IUK8 224 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 PTPMT1Q8WUK0 201 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SFT2D1Q8WV19 159 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 LIPHQ8WWY8 451 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 PSMF1Q92530 271 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 ARL5BQ96KC2 179 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF107Q9UII5 783 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 URGCP-MRPS24S4R325 110 aa7.51□□□□□ -1.21
LIMCH1-216ENST00000512820 SRCAPQ6ZRS2 3230 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 A6NLC8 198 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 ANKRD30BLA7E2S9 258 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 SIGLEC5O15389 551 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 OR2A4O95047 310 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 EFEMP2O95967 443 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CST4P01036 141 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 RAB13P51153 203 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CARD18P57730 90 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 SIGLEC14Q08ET2 396 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 ECH1Q13011 328 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 LINC01590Q5TEZ4 76 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 Q7L0L9 218 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 DPPA2Q7Z7J5 298 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 RPS4Y2Q8TD47 263 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 MITD1Q8WV92 249 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 OR2A7Q96R45 310 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 NPAS1Q99742 590 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 PRRX2Q99811 253 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 OR51B6Q9H340 312 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 PRR13Q9NZ81 148 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 VSIG4Q9Y279 399 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 MYLKQ15746 1914 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 A0A1W2PPC1 479 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 A0A1W2PQF6 199 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CDC14BO60729 498 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 VAMP5O95183 116 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 OR2C1O95371 312 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 ENPP1P22413 925 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF561Q8N587 486 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 OR1L3Q8NH93 324 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CTHRC1Q96CG8 243 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 KIRREL1Q96J84 757 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 PIGQQ9BRB3 760 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 STRAPQ9Y3F4 350 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 LMO7DNF2Z398 122 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 MRPL33O75394 65 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 TXNDC12O95881 172 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 S100A8P05109 93 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 H2AFB1P0C5Y9 115 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 MYF5P13349 255 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 MRPS34P82930 218 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 MGAT2Q10469 447 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 KISS1Q15726 138 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 FAM109BQ6ICB4 259 aaPredicted RBP7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 HIST2H3AQ71DI3 136 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 ADAD2Q8NCV1 583 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 IFT22Q9H7X7 185 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 UQCC1Q9NVA1 299 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 KLK13Q9UKR3 277 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 SEC16AO15027 2179 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 TRBV5-7A0A0A0MS05 114 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 LOC105371267A0A1B0GV96 52 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 IFNA4P05014 189 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 SLC25A4P12235 298 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 RAC2P15153 192 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CTRB1P17538 263 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 HYAL1Q12794 435 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF345Q14585 488 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 SP6Q3SY56 376 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CTRB2Q6GPI1 263 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CLEC18BQ6UXF7 455 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 ZNF813Q6ZN06 617 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 OCSTAMPQ9BR26 566 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 CFHR5Q9BXR6 569 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 TMEM74BQ9NUR3 256 aa7.5□□□□□ -1.21
LIMCH1-216ENST00000512820 FIGNL2A6NMB9 653 aa7.49□□□□□ -1.21
LIMCH1-216ENST00000512820 E9PQ18 207 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms