RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 NDRG3Q9UGV2 375 aa8.18□□□□□ -1.1
LIMCH1-215ENST00000512632 ARPC4-TTLL3A0A0A6YYG9 625 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF205O95201 554 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF17P17021 662 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 BLVRBP30043 206 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 AKR1C3P42330 323 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 KCNJ3P48549 501 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 MST1LQ2TV78 715 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 SLC38A9Q8NBW4 561 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 APCDD1LQ8NCL9 501 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 STOML3Q8TAV4 291 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 RTBDNQ9BSG5 229 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 NMES1Q9C002 83 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 B3GALT5Q9Y2C3 310 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 A0A1W2PR77 199 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF878C9JN71 531 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 E9PLN8 166 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 F5H5K5 113 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 GLI4P10075 376 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 MUC1P15941 1255 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 GABREP78334 506 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 PJVKQ0ZLH3 352 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 NUP210LQ5VU65 1888 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 C5orf46Q6UWT4 87 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 RHOFQ9HBH0 211 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 SDHAF3Q9NRP4 125 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF701Q9NV72 531 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 PPP4R1LQ9P1A2 415 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 RALGAPA1Q6GYQ0 2036 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 IGKV1-9A0A0C4DH69 117 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 GSTP1P09211 210 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 SERPINA2P20848 420 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 HNRNPKP61978 463 aaKnown RBP eCLIP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 PDZK1IP1Q13113 114 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 OR2A2Q6IF42 318 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 PRSS54Q6PEW0 395 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 CLEC9AQ6UXN8 241 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 RAB11FIP2Q7L804 512 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 TRBV6-7A0A0A0MS04 114 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 TRBV11-1A0A0K0K1C0 115 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 STMND1H3BQB6 276 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 MED6O75586 246 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 IGLV3-19P01714 112 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 CRYBA1P05813 215 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 QDPRP09417 244 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 TBPP20226 339 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 CD27P26842 260 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 PLXDC1Q8IUK5 500 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 ARRDC1Q8N5I2 433 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 URM1Q9BTM9 101 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 MRPL13Q9BYD1 178 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 ESRP2Q9H6T0 727 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 UCK1Q9HA47 277 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM100Q9NV29 134 aa8.17□□□□□ -1.1
LIMCH1-215ENST00000512632 ATG2AQ2TAZ0 1938 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM131Q92545 1883 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 COL4A2P08572 1712 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 SCGNO76038 276 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 CD80P33681 288 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 SLC6A9P48067 706 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF41P51814 821 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 PRSS12P56730 875 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 SHEQ5VZ18 495 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 ETV3LQ6ZN32 361 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 C17orf82Q86X59 251 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 PNLDC1Q8NA58 520 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 C12orf57Q99622 126 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 LMAN1LQ9HAT1 526 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 LPAR3Q9UBY5 353 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 FBXO9Q9UK97 447 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 SRPK3Q9UPE1 567 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 FER1L5A0AVI2 2057 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 IGHG1P01857 330 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 LPAR6P43657 344 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 P2RY4P51582 365 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 GPR85P60893 370 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 TMEM176BQ3YBM2 270 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 THEM4Q5T1C6 240 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 AADACL3Q5VUY0 350 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 OR10G3Q8NGC4 313 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 OR56B1Q8NGI3 324 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 OR10A2Q9H208 303 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 METTL7AQ9H8H3 244 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 RAB18Q9NP72 206 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 MMP26Q9NRE1 261 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 ALKBH4Q9NXW9 302 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 SNAPINO95295 136 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 HEXBP07686 556 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 SPP1P10451 314 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 NAAAQ02083 359 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 VAX1Q5SQQ9 334 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF529Q6P280 563 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 D2HGDHQ8N465 521 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 PGAM5Q96HS1 289 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 NRIP2Q9BQI9 281 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 SLC26A1Q9H2B4 701 aa8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 NCOA6Q14686 2063 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-215ENST00000512632 IGKV1D-8A0A087WSZ0 117 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 ZNF726A6NNF4 738 aa8.15□□□□□ -1.1
LIMCH1-215ENST00000512632 C9JQL5 133 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms