RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SLC2A1P11166 492 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF17P17021 662 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MSX1P28360 303 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF41P51814 821 aaPredicted RBP14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PRKXP51817 358 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 EMP2P54851 167 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CLRN1P58418 232 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SLC23A3Q6PIS1 610 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 GLIPR1L1Q6UWM5 242 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR2W3Q7Z3T1 314 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 UEVLDQ8IX04 471 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR8B12Q8NGG6 310 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CASTOR1Q8WTX7 329 aa14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 RBM14Q96PK6 669 aaKnown RBP14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PNRC2Q9NPJ4 139 aaKnown RBP14.21□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 A0A1W2PNR3 127 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SIGLEC5O15389 551 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SOCS1O15524 211 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUS4LO95620 317 aaKnown RBP14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF20P17024 532 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 AKR1C4P17516 323 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TBPP20226 339 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 EPHA8P29322 1005 aaPredicted RBP14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 RAB13P51153 203 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PEAR1Q5VY43 1037 aaPredicted RBP14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ADPRHL1Q8NDY3 354 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR10G3Q8NGC4 313 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MARCH1Q8TCQ1 289 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF471Q9BX82 626 aaPredicted RBP14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MOB1AQ9H8S9 216 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MRPS28Q9Y2Q9 187 aaKnown RBP14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 KNTC1P50748 2209 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 LOC400499M0QZD8 3231 aa14.2□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 RAMP1O60894 148 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 IGHG1P01857 330 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CHRM2P08172 466 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 VAMP1P23763 118 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR3A4PP47883 348 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 STARP49675 285 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMEM50BP56557 158 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF121P58317 390 aaPredicted RBP14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MICBQ29980 383 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 KCTD9Q7L273 389 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF101Q8IZC7 436 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR4K15Q8NH41 348 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SAP25Q8TEE9 199 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PHYHIPLQ96FC7 376 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SDHAF3Q9NRP4 125 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 WIF1Q9Y5W5 379 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 KCNAB3O43448 404 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SIGLEC6O43699 453 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 KLK2P20151 261 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CNR1P21554 472 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PLA2G2CQ5R387 149 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 FAM69BQ5VUD6 431 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CARD17Q5XLA6 110 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMEM71Q6P5X7 295 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ABHD12BQ7Z5M8 362 aaPredicted RBP14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR2AJ1Q8NGZ0 328 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 GPR84Q9NQS5 396 aa14.19□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 A0A1W2PP11 408 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 EEF1E1-BLOC1S5C9J1V9 151 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CDX4O14627 284 aaPredicted RBP14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 RER1O15258 196 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 NUPL2O15504 423 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CDC14BO60729 498 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 RAD51DO75771 328 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MPIG6BO95866 241 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 IFNA6P05013 189 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 GP1BAP07359 652 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PPIAP62937 165 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 GABREP78334 506 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PDSS1Q5T2R2 415 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR2M3Q8NG83 312 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 THAP6Q8TBB0 222 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SSC4DQ8WTU2 575 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR6C1Q96RD1 312 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 FAM117AQ9C073 453 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 BANF2Q9H503 90 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MYOTQ9UBF9 498 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ASH2LQ9UBL3 628 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 POLR1DQ9Y2S0 133 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 EML6Q6ZMW3 1958 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 A0A1B0GW55 424 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MPTX1A8MV57 137 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR2J2O76002 312 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 APOC3P02656 99 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CRHP06850 196 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 FABP1P07148 127 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 GSTP1P09211 210 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 H2AFB1P0C5Y9 115 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUX4L2P0CJ85 424 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUX4L3P0CJ86 424 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUX4L4P0CJ87 422 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUX4L5P0CJ88 424 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUX4L6P0CJ89 424 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUX4L7P0CJ90 424 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 HIST1H1DP16402 221 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CCL1P22362 96 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SERPINF1P36955 418 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms