RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TLX3O43711 291 aaPredicted RBP16.75■□□□□ 0.27
VIM-203ENST00000469543 HTR3BO95264 441 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 MPGP29372 298 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 DSCR4P56555 118 aaPredicted RBP16.75■□□□□ 0.27
VIM-203ENST00000469543 SIGIRRQ6IA17 410 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 RGS7BPQ6MZT1 257 aaPredicted RBP16.75■□□□□ 0.27
VIM-203ENST00000469543 SLC38A6Q8IZM9 456 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 TMEM123Q8N131 208 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 ZNF75AQ96N20 296 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 MPTX1A8MV57 137 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 SHOXO15266 292 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 LAMTOR5O43504 91 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 MEF2DQ14814 521 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 LYG2Q86SG7 212 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 CDH26Q8IXH8 852 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 KCNMB2Q9Y691 235 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 DNAJC13O75165 2243 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 ZNF407Q9C0G0 2248 aa16.75■□□□□ 0.27
VIM-203ENST00000469543 ZNF205O95201 554 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 HIST1H1DP16402 221 aaKnown RBP16.74■□□□□ 0.27
VIM-203ENST00000469543 RFC3P40938 356 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 SUCLG1P53597 346 aaKnown RBP16.74■□□□□ 0.27
VIM-203ENST00000469543 HGFACQ04756 655 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 MPPED2Q15777 294 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 KCNMB1Q16558 191 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 TUSC1Q2TAM9 212 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 CLVS2Q5SYC1 327 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 DOK3Q7L591 496 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 NAXDQ8IW45 347 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 BOLLQ8N9W6 283 aaKnown RBP16.74■□□□□ 0.27
VIM-203ENST00000469543 OR51T1Q8NGJ9 327 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 ALKBH3Q96Q83 286 aaPredicted RBP16.74■□□□□ 0.27
VIM-203ENST00000469543 NXT1Q9UKK6 140 aaKnown RBP16.74■□□□□ 0.27
VIM-203ENST00000469543 PIGLQ9Y2B2 252 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 TNRC6BQ9UPQ9 1833 aaKnown RBP16.74■□□□□ 0.27
VIM-203ENST00000469543 DHHO43323 396 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 IGHV3-9P01782 118 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 FCGR2AP12318 317 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 ARFRP1Q13795 201 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 UBALD2Q8IYN6 164 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 BHLHE23Q8NDY6 225 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 GJC3Q8NFK1 279 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 KCNG3Q8TAE7 436 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 CRLF2Q9HC73 371 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 NBEAQ8NFP9 2946 aa16.74■□□□□ 0.27
VIM-203ENST00000469543 LOC102725191A0A1B0GVB3 256 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 TRAPPC6AO75865 159 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 TCN2P20062 427 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 PTGFRP43088 359 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 MLF1P58340 268 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 MC2RQ01718 297 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 EXT1Q16394 746 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 PGAP1Q75T13 922 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 ULBP2Q9BZM5 246 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 MOB1AQ9H8S9 216 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 SH2D2AQ9NP31 389 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 SLC2A8Q9NY64 477 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 ANGPTL7O43827 346 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 TIPARPQ7Z3E1 657 aaKnown RBP16.73■□□□□ 0.27
VIM-203ENST00000469543 SSC4DQ8WTU2 575 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 MS4A7Q9GZW8 240 aaPredicted RBP16.73■□□□□ 0.27
VIM-203ENST00000469543 C5orf66Q9H5L9 145 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 CCDC187A0A096LP49 1063 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 hCG_1807616A0A1W2PRN6 198 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 RPA2P15927 270 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 C4BPBP20851 252 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 CCL1P22362 96 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 ACKR3P25106 362 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 FOLR3P41439 243 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 GRB2P62993 217 aaKnown RBP16.73■□□□□ 0.27
VIM-203ENST00000469543 SLC9A3R2Q15599 337 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 ZNF239Q16600 458 aaKnown RBP16.73■□□□□ 0.27
VIM-203ENST00000469543 WDR5BQ86VZ2 330 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 ARMC10Q8N2F6 343 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 STPG2Q8N412 459 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 OR14L1PQ8NHC6 308 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 SCARB1Q8WTV0 552 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 TMEM54Q969K7 222 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 HDHD3Q9BSH5 251 aaPredicted RBP16.73■□□□□ 0.27
VIM-203ENST00000469543 DEPPQ9NTK1 212 aa16.73■□□□□ 0.27
VIM-203ENST00000469543 IGKV1D-8A0A087WSZ0 117 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 CCDC163A0A0D9SF12 145 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 M0R135 149 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 ADAP1O75689 374 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 B4GALT1P15291 398 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 MGMTP16455 207 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 BLVRBP30043 206 aaPredicted RBP16.72■□□□□ 0.27
VIM-203ENST00000469543 WIPI1Q5MNZ9 446 aaPredicted RBP16.72■□□□□ 0.27
VIM-203ENST00000469543 ZNF774Q6NX45 483 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 BRICD5Q6PL45 260 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 M1APQ8TC57 530 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 MITD1Q8WV92 249 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 SGK3Q96BR1 496 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 ZNF799Q96GE5 643 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 FOXD3Q9UJU5 478 aaPredicted RBP16.72■□□□□ 0.27
VIM-203ENST00000469543 MFSD2BA6NFX1 497 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 CD8AP01732 235 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 LSM6P62312 80 aaKnown RBP16.72■□□□□ 0.27
VIM-203ENST00000469543 ZMYND11Q15326 602 aa16.72■□□□□ 0.27
VIM-203ENST00000469543 C11orf87Q6NUJ2 197 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms