RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 LIPFP07098 398 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 RNASE1P07998 156 aaKnown RBP11.59□□□□□ -0.55
USP4-206ENST00000461553 HKR1P10072 659 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 EGR1P18146 543 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 CSNK2BP67870 215 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 CDK5Q00535 292 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 IL5RAQ01344 420 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 FOXL1Q12952 345 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 MICBQ29980 383 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 TEX36Q5VZQ5 186 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 BRD3OSQ6XYD6 125 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 WDR86Q86TI4 376 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 BBS1Q8NFJ9 593 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 OR1M1Q8NGA1 313 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 C1orf147Q96MC9 270 aaPredicted RBP11.59□□□□□ -0.55
USP4-206ENST00000461553 RTL8AQ9BWD3 113 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 NIPAL2Q9H841 368 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 RNPEPL1Q9HAU8 725 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 SMURF1Q9HCE7 757 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 PAPOLBQ9NRJ5 636 aaKnown RBP11.59□□□□□ -0.55
USP4-206ENST00000461553 ZNF391Q9UJN7 358 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 LAMP5Q9UJQ1 280 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 POMPQ9Y244 141 aa11.59□□□□□ -0.55
USP4-206ENST00000461553 IGHV3OR15-7A0A075B7D8 119 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 ZNF879B4DU55 563 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 CLDN34H7C241 214 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 P2RY10O00398 339 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 TOX4O94842 621 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 MUC1P15941 1255 aaPredicted RBP11.58□□□□□ -0.56
USP4-206ENST00000461553 PRKACGP22612 351 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 SLC2A5P22732 501 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 CFHR2P36980 270 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 BPIFB3P59826 476 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 APOFQ13790 326 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 SNAPC1Q16533 368 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 METTL11BQ5VVY1 283 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 WDR82Q6UXN9 313 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 KRT77Q7Z794 578 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 OR8B12Q8NGG6 310 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 FAM81AQ8TBF8 368 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 ST8SIA4Q92187 359 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 ZDHHC16Q969W1 377 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 ITPKCQ96DU7 683 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 ZNF319Q9P2F9 582 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 KLHDC2Q9Y2U9 406 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 RHBDD3Q9Y3P4 386 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 LRP12Q9Y561 859 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 MPC1Q9Y5U8 109 aa11.58□□□□□ -0.56
USP4-206ENST00000461553 MDFIC2A0A1B0GVS7 189 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 NKX6-3A6NJ46 265 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 TMEM210A6NLX4 147 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 DVL1O14640 695 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 ECDO95905 644 aaPredicted RBP11.57□□□□□ -0.56
USP4-206ENST00000461553 LHBP01229 141 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 SFTPBP07988 381 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 PRDX4Q13162 271 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 SLC9A3R2Q15599 337 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 C11orf91Q3C1V1 193 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 TMEM236Q5W0B7 351 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 KCTD18Q6PI47 426 aaPredicted RBP11.57□□□□□ -0.56
USP4-206ENST00000461553 KCTD8Q6ZWB6 473 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 SLC36A1Q7Z2H8 476 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 COMMD2Q86X83 199 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 PAPD5Q8NDF8 572 aaKnown RBP11.57□□□□□ -0.56
USP4-206ENST00000461553 SGMS2Q8NHU3 365 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 C12orf43Q96C57 262 aaKnown RBP11.57□□□□□ -0.56
USP4-206ENST00000461553 SLC7A6OSQ96CW6 309 aaPredicted RBP11.57□□□□□ -0.56
USP4-206ENST00000461553 NRBF2Q96F24 287 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 TVP23BQ9NYZ1 205 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 KAAG1Q9UBP8 84 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 MGAM2Q2M2H8 2515 aa11.57□□□□□ -0.56
USP4-206ENST00000461553 ZNF850A8MQ14 1090 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 SRRM5B3KS81 715 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 CDIPTO14735 213 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 MRPL3P09001 348 aaKnown RBP11.56□□□□□ -0.56
USP4-206ENST00000461553 ACKR3P25106 362 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 CRISP1P54107 249 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 WDR38Q5JTN6 314 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 RUSC1-AS1Q66K80 236 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 BTN2A1Q7KYR7 527 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 ZDHHC23Q8IYP9 409 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 GALNT4Q8N4A0 578 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 GATAD2BQ8WXI9 593 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 WDFY2Q96P53 400 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 PKP2Q99959 881 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 MROQ9BYG7 248 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 YIPF3Q9GZM5 350 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 TLNRD1Q9H1K6 362 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 DNAJB11Q9UBS4 358 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 PCDHGB1Q9Y5G3 927 aa11.56□□□□□ -0.56
USP4-206ENST00000461553 SOX21Q9Y651 276 aaPredicted RBP11.56□□□□□ -0.56
USP4-206ENST00000461553 CCDC182A6NF36 153 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 TNFRSF13BO14836 293 aaPredicted RBP11.55□□□□□ -0.56
USP4-206ENST00000461553 HOXA3O43365 443 aaPredicted RBP11.55□□□□□ -0.56
USP4-206ENST00000461553 CST4P01036 141 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 MMP9P14780 707 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 ALOX5APP20292 161 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 IL13RA1P78552 427 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 POU4F2Q12837 409 aa11.55□□□□□ -0.56
USP4-206ENST00000461553 PDCD1Q15116 288 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms