RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 DOLPP1Q86YN1 238 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 SMIM4Q8WVI0 70 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 YIPF5Q969M3 257 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 SPACA5Q96QH8 159 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 REPIN1Q9BWE0 567 aaKnown RBP12.34□□□□□ -0.43
USP39-207ENST00000450066 SFXN3Q9BWM7 321 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 FBLN5Q9UBX5 448 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 LINC00854A0A1B0GVQ3 168 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 GGT3PA6NGU5 568 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 LANCL1O43813 399 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 HOXC12P31275 282 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 TAS2R20P59543 309 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 MRPS10P82664 201 aaKnown RBP12.34□□□□□ -0.43
USP39-207ENST00000450066 QRFPP83859 136 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 GK2Q14410 553 aaPredicted RBP12.34□□□□□ -0.43
USP39-207ENST00000450066 CLVS2Q5SYC1 327 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 GFRALQ6UXV0 394 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 C3P1Q6ZMU1 363 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 RNF144BQ7Z419 303 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 BIVMQ86UB2 503 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 CXorf67Q86X51 503 aaPredicted RBP12.34□□□□□ -0.43
USP39-207ENST00000450066 C17orf78Q8N4C9 275 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 PHF21AQ96BD5 680 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 SPSB1Q96BD6 273 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 SLC22A4Q9H015 551 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 FAIMQ9NVQ4 179 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 RAB22AQ9UL26 194 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 ZNF835Q9Y2P0 537 aa12.34□□□□□ -0.43
USP39-207ENST00000450066 RP1L1Q8IWN7 2480 aaPredicted RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 GMDSO60547 372 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 GLI4P10075 376 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 RFX2P48378 723 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 DGCR2P98153 550 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 TSC22D1Q15714 1073 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 TBC1D28Q2M2D7 210 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 AWAT2Q6E213 333 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 NRARPQ7Z6K4 114 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 PAQR4Q8N4S7 273 aaPredicted RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 PNLDC1Q8NA58 520 aaKnown RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 GPER1Q99527 375 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 C11orf54Q9H0W9 315 aaPredicted RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 ATG5Q9H1Y0 275 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 OPA3Q9H6K4 179 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 NEK6Q9HC98 313 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 ASF1BQ9NVP2 202 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 TBCCD1Q9NVR7 557 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 MRPS28Q9Y2Q9 187 aaKnown RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 STARD10Q9Y365 291 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 INTS1Q8N201 2190 aaKnown RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 A0A0A6YYH2 397 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 ZNF816-ZNF321PA0A0X1KG74 233 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 A6NJ64 397 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 GABARAPH6UMI1 98 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 J3QW42 95 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 ICMTO60725 284 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 NGFP01138 241 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 UBBP0CG47 229 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 VSIG8P0DPA2 414 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 SPNP16150 400 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 PRKACBP22694 351 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 WNT5AP41221 380 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 ALDH3B1P43353 468 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 OR3A4PP47883 348 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 MRPL49Q13405 166 aaKnown RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 CNN3Q15417 329 aaKnown RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 ZNF57Q68EA5 555 aaPredicted RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 CRIP3Q6Q6R5 217 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 CCBE1Q6UXH8 406 aaPredicted RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 ZNF101Q8IZC7 436 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 WDR31Q8NA23 367 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 ZCCHC14Q8WYQ9 949 aaKnown RBP12.33□□□□□ -0.44
USP39-207ENST00000450066 TECTBQ96PL2 329 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 OBP2BQ9NPH6 170 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 GPR173Q9NS66 373 aa12.33□□□□□ -0.44
USP39-207ENST00000450066 A0A1W2PR80 420 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 NRASP01111 189 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 CD3GP09693 182 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 CBR1P16152 277 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 PTGFRP43088 359 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 PRSS12P56730 875 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 PMPCAQ10713 525 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 UNC119Q13432 240 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 PRR30Q53SZ7 412 aaPredicted RBP12.32□□□□□ -0.44
USP39-207ENST00000450066 OR10K2Q6IF99 312 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 MZT2BQ6NZ67 158 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 GLIPR1L1Q6UWM5 242 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 MRPL21Q7Z2W9 205 aaKnown RBP12.32□□□□□ -0.44
USP39-207ENST00000450066 OR2W3Q7Z3T1 314 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 OR5L1Q8NGL2 311 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 NPRL2Q8WTW4 380 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 CPNE2Q96FN4 548 aaPredicted RBP12.32□□□□□ -0.44
USP39-207ENST00000450066 C1orf147Q96MC9 270 aaPredicted RBP12.32□□□□□ -0.44
USP39-207ENST00000450066 MYEF2Q9P2K5 600 aaKnown RBP12.32□□□□□ -0.44
USP39-207ENST00000450066 GHRLQ9UBU3 117 aa12.32□□□□□ -0.44
USP39-207ENST00000450066 METTL21EPA6NDL7 271 aa12.31□□□□□ -0.44
USP39-207ENST00000450066 TMEM14DPA8MWL7 114 aa12.31□□□□□ -0.44
USP39-207ENST00000450066 LYRM1O43325 122 aa12.31□□□□□ -0.44
USP39-207ENST00000450066 SSX4O60224 188 aa12.31□□□□□ -0.44
USP39-207ENST00000450066 KDM4BO94953 1096 aa12.31□□□□□ -0.44
USP39-207ENST00000450066 IGKV3-15P01624 115 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms