RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 A0A1B0GVI7 797 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 NKX6-3A6NJ46 265 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 FAM183AA6NL82 134 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 ACOT8O14734 319 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 ECDO95905 644 aaPredicted RBP11.97□□□□□ -0.49
SDC1-204ENST00000429035 SELLP14151 372 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 DDOSTP39656 456 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 SLC25A1P53007 311 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 DLX1P56177 255 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 ZNF121P58317 390 aaPredicted RBP11.97□□□□□ -0.49
SDC1-204ENST00000429035 FAM3AP98173 230 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 KLRD1Q13241 179 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 DHRS7BQ6IAN0 325 aaPredicted RBP11.97□□□□□ -0.49
SDC1-204ENST00000429035 KCTD8Q6ZWB6 473 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 IQCF1Q8N6M8 205 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 OR1M1Q8NGA1 313 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 TEX47Q8TBZ9 253 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 INTS14Q96SY0 518 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 CITED1Q99966 193 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 MICU1Q9BPX6 476 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 OR10A2Q9H208 303 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 TOR3AQ9H497 397 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 PPP1R3EQ9H7J1 279 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 CNTD2Q9H8S5 307 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 REEP1Q9H902 201 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 SP140LQ9H930 580 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 SNTG1Q9NSN8 517 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 NDE1Q9NXR1 346 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 PRPF19Q9UMS4 504 aaKnown RBP11.97□□□□□ -0.49
SDC1-204ENST00000429035 BAIAP2Q9UQB8 552 aa11.97□□□□□ -0.49
SDC1-204ENST00000429035 ANXA2P2A6NMY6 339 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 NDUFB3O43676 98 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 H2BFMP0C1H6 154 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 NAA10P41227 235 aaPredicted RBP11.96□□□□□ -0.49
SDC1-204ENST00000429035 CDONQ4KMG0 1287 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 LRRC10Q5BKY1 277 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 WDR82Q6UXN9 313 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 LDLRAD3Q86YD5 345 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 CMTM4Q8IZR5 234 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 OR5T2Q8NGG2 359 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 LRTOMTQ8WZ04 291 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 SPSB4Q96A44 273 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 OR51V1Q9H2C8 321 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 MMP27Q9H306 513 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 DPAGT1Q9H3H5 408 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 RNPEPL1Q9HAU8 725 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 VNN3Q9NY84 501 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 KAAG1Q9UBP8 84 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 CAB39Q9Y376 341 aaPredicted RBP11.96□□□□□ -0.49
SDC1-204ENST00000429035 KPTNQ9Y664 436 aa11.96□□□□□ -0.49
SDC1-204ENST00000429035 TET2Q6N021 2002 aaPredicted RBP11.96□□□□□ -0.5
SDC1-204ENST00000429035 H3BN98 237 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 CDIPTO14735 213 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 TIPRLO75663 272 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 PAHP00439 452 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 LHBP01229 141 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 APOC1P02654 83 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 TFF1P04155 84 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 FBP1P09467 338 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 MUC1P15941 1255 aaPredicted RBP11.95□□□□□ -0.5
SDC1-204ENST00000429035 CFL1P23528 166 aaKnown RBP11.95□□□□□ -0.5
SDC1-204ENST00000429035 EEF1B2P24534 225 aaKnown RBP11.95□□□□□ -0.5
SDC1-204ENST00000429035 GSTT1P30711 240 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 IER3P46695 156 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 GSK3AP49840 483 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 BLVRAP53004 296 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 KRTAP10-3P60369 221 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 RPL15P61313 204 aaKnown RBP11.95□□□□□ -0.5
SDC1-204ENST00000429035 TEX30Q5JUR7 227 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 ZNF770Q6IQ21 691 aaPredicted RBP11.95□□□□□ -0.5
SDC1-204ENST00000429035 GDPGP1Q6ZNW5 385 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 PIP4P2Q8N4L2 257 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 OR10G2Q8NGC3 310 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 LINC01006Q8NI28 216 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 RPL3LQ92901 407 aaKnown RBP11.95□□□□□ -0.5
SDC1-204ENST00000429035 SGK3Q96BR1 496 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 AMELYQ99218 206 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 ABHD6Q9BV23 337 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 RTL8AQ9BWD3 113 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 NMNAT2Q9BZQ4 307 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 TCF7L1Q9HCS4 588 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 TAS2R1Q9NYW7 299 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 ACTR3BQ9P1U1 418 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 ZNF391Q9UJN7 358 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 RHBDD3Q9Y3P4 386 aa11.95□□□□□ -0.5
SDC1-204ENST00000429035 A0A1W2PQ09 198 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 ZNF850A8MQ14 1090 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 MAGEA2P43356 314 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 HMGA2P52926 109 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 GNGT1P63211 74 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 IL5RAQ01344 420 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 GUCA2AQ02747 115 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 KLHL12Q53G59 568 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 LINC01590Q5TEZ4 76 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 OR2T5Q6IEZ7 315 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.94□□□□□ -0.5
SDC1-204ENST00000429035 C11orf53Q8IXP5 236 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 PNKDQ8N490 385 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 FTMTQ8N4E7 242 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 CSNK2A3Q8NEV1 391 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms