RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 KLF9Q13886 244 aaPredicted RBP8.79□□□□□ -1
USP54-205ENST00000424265 MRM1Q6IN84 353 aaKnown RBP8.79□□□□□ -1
USP54-205ENST00000424265 SPRYD4Q8WW59 207 aaPredicted RBP8.79□□□□□ -1
USP54-205ENST00000424265 TM4SF19Q96DZ7 209 aa8.79□□□□□ -1
USP54-205ENST00000424265 SAT2Q96F10 170 aaPredicted RBP8.79□□□□□ -1
USP54-205ENST00000424265 LIN37Q96GY3 246 aaPredicted RBP8.79□□□□□ -1
USP54-205ENST00000424265 FAM210BQ96KR6 192 aa8.79□□□□□ -1
USP54-205ENST00000424265 VAMP8Q9BV40 100 aa8.79□□□□□ -1
USP54-205ENST00000424265 BARX1Q9HBU1 254 aaPredicted RBP8.79□□□□□ -1
USP54-205ENST00000424265 ASB6Q9NWX5 421 aa8.79□□□□□ -1
USP54-205ENST00000424265 FKBP11Q9NYL4 201 aa8.79□□□□□ -1
USP54-205ENST00000424265 VSTM2BA6NLU5 285 aa8.79□□□□□ -1
USP54-205ENST00000424265 TRGC2P03986 189 aa8.79□□□□□ -1
USP54-205ENST00000424265 CSRP1P21291 193 aaKnown RBP8.79□□□□□ -1
USP54-205ENST00000424265 SLC6A6P31641 620 aa8.79□□□□□ -1
USP54-205ENST00000424265 ARL3P36405 182 aa8.79□□□□□ -1
USP54-205ENST00000424265 FAAP20Q6NZ36 180 aa8.79□□□□□ -1
USP54-205ENST00000424265 BTNL3Q6UXE8 466 aa8.79□□□□□ -1
USP54-205ENST00000424265 Q6ZRG5 221 aa8.79□□□□□ -1
USP54-205ENST00000424265 GRINAQ7Z429 371 aa8.79□□□□□ -1
USP54-205ENST00000424265 BCDIN3DQ7Z5W3 292 aaKnown RBP8.79□□□□□ -1
USP54-205ENST00000424265 HSD17B8Q92506 261 aa8.79□□□□□ -1
USP54-205ENST00000424265 SLC35E1Q96K37 410 aa8.79□□□□□ -1
USP54-205ENST00000424265 NKX3-1Q99801 234 aaPredicted RBP8.79□□□□□ -1
USP54-205ENST00000424265 IKZF5Q9H5V7 419 aa8.79□□□□□ -1
USP54-205ENST00000424265 CACFD1Q9UGQ2 172 aa8.79□□□□□ -1
USP54-205ENST00000424265 GON4LQ3T8J9 2241 aa8.79□□□□□ -1
USP54-205ENST00000424265 SPAG17Q6Q759 2223 aa8.79□□□□□ -1
USP54-205ENST00000424265 ATG2BQ96BY7 2078 aa8.78□□□□□ -1
USP54-205ENST00000424265 HCRTR1O43613 425 aa8.78□□□□□ -1
USP54-205ENST00000424265 ACP2P11117 423 aa8.78□□□□□ -1
USP54-205ENST00000424265 PEBP1P30086 187 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 FZD5Q13467 585 aa8.78□□□□□ -1
USP54-205ENST00000424265 TMEM41BQ5BJD5 291 aa8.78□□□□□ -1
USP54-205ENST00000424265 GFI1BQ5VTD9 330 aa8.78□□□□□ -1
USP54-205ENST00000424265 NRMQ8IXM6 262 aa8.78□□□□□ -1
USP54-205ENST00000424265 CIB3Q96Q77 187 aaPredicted RBP8.78□□□□□ -1
USP54-205ENST00000424265 POTEKPQ9BYX7 375 aa8.78□□□□□ -1
USP54-205ENST00000424265 ZNF701Q9NV72 531 aaPredicted RBP8.78□□□□□ -1
USP54-205ENST00000424265 LPAR3Q9UBY5 353 aa8.78□□□□□ -1
USP54-205ENST00000424265 PILRAQ9UKJ1 303 aa8.78□□□□□ -1
USP54-205ENST00000424265 GABARAPH6UMI1 98 aa8.78□□□□□ -1
USP54-205ENST00000424265 PYCARD-AS1I3L0S3 204 aa8.78□□□□□ -1
USP54-205ENST00000424265 KCNAB3O43448 404 aa8.78□□□□□ -1
USP54-205ENST00000424265 FGF17O60258 216 aa8.78□□□□□ -1
USP54-205ENST00000424265 EIF4E2O60573 245 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 PMS2P2O95744 297 aa8.78□□□□□ -1
USP54-205ENST00000424265 RENP00797 406 aa8.78□□□□□ -1
USP54-205ENST00000424265 FGF5P12034 268 aa8.78□□□□□ -1
USP54-205ENST00000424265 ZNF28P17035 718 aa8.78□□□□□ -1
USP54-205ENST00000424265 TNFRSF1BP20333 461 aa8.78□□□□□ -1
USP54-205ENST00000424265 CEBPDP49716 269 aaPredicted RBP8.78□□□□□ -1
USP54-205ENST00000424265 TNFSF10P50591 281 aa8.78□□□□□ -1
USP54-205ENST00000424265 EXOSC7Q15024 291 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 STEAP1BQ6NZ63 245 aa8.78□□□□□ -1
USP54-205ENST00000424265 DHRS13Q6UX07 377 aa8.78□□□□□ -1
USP54-205ENST00000424265 FAM220AQ7Z4H9 259 aa8.78□□□□□ -1
USP54-205ENST00000424265 OR52I2Q8NH67 350 aa8.78□□□□□ -1
USP54-205ENST00000424265 ABHD3Q8WU67 409 aa8.78□□□□□ -1
USP54-205ENST00000424265 UTP23Q9BRU9 249 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 BCL2L10Q9HD36 194 aa8.78□□□□□ -1
USP54-205ENST00000424265 TMEM74BQ9NUR3 256 aa8.78□□□□□ -1
USP54-205ENST00000424265 STEAP1Q9UHE8 339 aa8.78□□□□□ -1
USP54-205ENST00000424265 MRPS2Q9Y399 296 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 GOLGA4Q13439 2230 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 A0A1B0GV50 99 aa8.78□□□□□ -1
USP54-205ENST00000424265 ZAR1LA6NP61 321 aa8.78□□□□□ -1
USP54-205ENST00000424265 NDUFB6O95139 128 aa8.78□□□□□ -1
USP54-205ENST00000424265 MT-CO2P00403 227 aa8.78□□□□□ -1
USP54-205ENST00000424265 OR5G3P0C626 314 aa8.78□□□□□ -1
USP54-205ENST00000424265 OR12D2P58182 307 aa8.78□□□□□ -1
USP54-205ENST00000424265 NKPD1Q17RQ9 610 aa8.78□□□□□ -1
USP54-205ENST00000424265 NUFIP2Q7Z417 695 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 IQCF1Q8N6M8 205 aa8.78□□□□□ -1
USP54-205ENST00000424265 TMEM178AQ8NBL3 297 aa8.78□□□□□ -1
USP54-205ENST00000424265 OR11G2Q8NGC1 345 aa8.78□□□□□ -1
USP54-205ENST00000424265 SLC2A12Q8TD20 617 aa8.78□□□□□ -1
USP54-205ENST00000424265 CASTOR1Q8WTX7 329 aa8.78□□□□□ -1
USP54-205ENST00000424265 ASB17Q8WXJ9 295 aa8.78□□□□□ -1
USP54-205ENST00000424265 DDIT4LQ96D03 193 aa8.78□□□□□ -1
USP54-205ENST00000424265 PRRC1Q96M27 445 aa8.78□□□□□ -1
USP54-205ENST00000424265 TBX5Q99593 518 aa8.78□□□□□ -1
USP54-205ENST00000424265 DAPL1A0PJW8 107 aa8.78□□□□□ -1
USP54-205ENST00000424265 XKRY2A2RUG3 117 aa8.78□□□□□ -1
USP54-205ENST00000424265 SYNGR4O95473 234 aa8.78□□□□□ -1
USP54-205ENST00000424265 PET100P0DJ07 73 aa8.78□□□□□ -1
USP54-205ENST00000424265 MMP11P24347 488 aa8.78□□□□□ -1
USP54-205ENST00000424265 HNRNPA3P51991 378 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 CRB2Q5IJ48 1285 aa8.78□□□□□ -1
USP54-205ENST00000424265 LDLRAD2Q5SZI1 272 aa8.78□□□□□ -1
USP54-205ENST00000424265 AWAT2Q6E213 333 aa8.78□□□□□ -1
USP54-205ENST00000424265 TOMM20LQ6UXN7 152 aa8.78□□□□□ -1
USP54-205ENST00000424265 C14orf166Q9Y224 244 aaKnown RBP8.78□□□□□ -1
USP54-205ENST00000424265 ZNF443Q9Y2A4 671 aaPredicted RBP8.78□□□□□ -1
USP54-205ENST00000424265 CDC14CA4D256 554 aa8.77□□□□□ -1
USP54-205ENST00000424265 ZNF891A8MT65 544 aaPredicted RBP8.77□□□□□ -1
USP54-205ENST00000424265 P2RX6O15547 441 aa8.77□□□□□ -1
USP54-205ENST00000424265 TFPI2P48307 235 aa8.77□□□□□ -1
USP54-205ENST00000424265 HIST1H3AP68431 136 aa8.77□□□□□ -1
USP54-205ENST00000424265 CNN3Q15417 329 aaKnown RBP8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms