RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FAM78AQ5JUQ0 283 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 POMZP3Q6PJE2 187 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 SPNS3Q6ZMD2 512 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 LINC00346Q8IVM7 164 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 ZNF101Q8IZC7 436 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 SLC26A10Q8NG04 563 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 MAFIPQ8WZ33 124 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 SLC25A36Q96CQ1 311 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 NTNG2Q96CW9 530 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 TCTN2Q96GX1 697 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 DGAT2Q96PD7 388 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 GINS3Q9BRX5 216 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 RTN4RQ9BZR6 473 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 FAM206AQ9NX38 181 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 MMP24Q9Y5R2 645 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 MYO7AQ13402 2215 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 A0A1B0GW64 132 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 SDCBPO00560 298 aaPredicted RBP9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BKO60814 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 RAMP1O60894 148 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 IGHMP01871 453 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BJP06899 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 NDUFB7P17568 137 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BOP23527 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BBP33778 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 ZNF93P35789 620 aaPredicted RBP9.47□□□□□ -0.89
USP54-204ENST00000422491 ZNF84P51523 738 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BDP58876 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BCP62807 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST2H2BEQ16778 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.47□□□□□ -0.89
USP54-204ENST00000422491 CLEC9AQ6UXN8 241 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 STX12Q86Y82 276 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 TMEM156Q8N614 296 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 MRPL43Q8N983 215 aaKnown RBP9.47□□□□□ -0.89
USP54-204ENST00000422491 ZNF610Q8N9Z0 462 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 EMG1Q92979 244 aaKnown RBP9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BHQ93079 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BNQ99877 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 HIST1H2BMQ99879 126 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 PBDC1Q9BVG4 233 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 FOXQ1Q9C009 403 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 WFDC1Q9HC57 220 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 C1orf123Q9NWV4 160 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 B3GALT5Q9Y2C3 310 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 TMED3Q9Y3Q3 217 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 PUS1Q9Y606 427 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP54-204ENST00000422491 CACNA1IQ9P0X4 2223 aa9.47□□□□□ -0.89
USP54-204ENST00000422491 A8MVM7 634 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 GMFGO60234 142 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 DXOO77932 396 aaKnown RBP9.46□□□□□ -0.89
USP54-204ENST00000422491 UTS2O95399 124 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 MPIG6BO95866 241 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 ADH1BP00325 375 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 F10P00742 488 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 AMY2BP19961 511 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 BCKDHBP21953 392 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 CHATP28329 748 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 DDTP30046 118 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 GABRA4P48169 554 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 ZNF117Q03924 483 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 ERV3-1Q14264 604 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 GAMTQ14353 236 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 C14orf28Q4W4Y0 310 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 PSRC1Q6PGN9 363 aaPredicted RBP9.46□□□□□ -0.89
USP54-204ENST00000422491 DEGS2Q6QHC5 323 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 RD3Q7Z3Z2 195 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 LRRC18Q8N456 261 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 HPSE2Q8WWQ2 592 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 OIT3Q8WWZ8 545 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 S100PBPQ96BU1 408 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 BCO1Q9HAY6 547 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 PLEKHA2Q9HB19 425 aa9.46□□□□□ -0.89
USP54-204ENST00000422491 C17orf51A8MQB3 221 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SLC31A1O15431 190 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 CDC14BO60729 498 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 IL33O95760 270 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 MT-ATP6P00846 226 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SOD3P08294 240 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 CXCL1P09341 107 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 PAX1P15863 534 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 CXCR1P25024 350 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 CRABP1P29762 137 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 P2RY1P47900 373 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 FOXK1P85037 733 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 ELOBQ15370 118 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SURF2Q15527 256 aaPredicted RBP9.46□□□□□ -0.9
USP54-204ENST00000422491 GLIPR1L1Q6UWM5 242 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 HIST3H2BBQ8N257 126 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 CCDC54Q8NEL0 328 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 OR5D14Q8NGL3 314 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 FNDC9Q8TBE3 224 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 Q8WTZ3 238 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 ARHGAP5-AS1Q96IT6 56 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 TGM7Q96PF1 710 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SPACA5Q96QH8 159 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 CCDC3Q9BQI4 270 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 SUSD2Q9UGT4 822 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 ZDHHC8Q9ULC8 765 aa9.46□□□□□ -0.9
USP54-204ENST00000422491 STRAPQ9Y3F4 350 aaKnown RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms