RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 OPA3Q9H6K4 179 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 RNF150Q9ULK6 438 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 EXOGQ9Y2C4 368 aaKnown RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 SERPINE3A8MV23 424 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 ZNF766Q5HY98 468 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 CDC20BQ86Y33 519 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 LIN7CQ9NUP9 197 aaKnown RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 R4GN57 208 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 ZNF724A8MTY0 619 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 KLK10O43240 276 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 AKR7A2O43488 359 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 EPPINO95925 133 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 TMEM11P17152 192 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 SSBP1Q04837 148 aaKnown RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 DBPQ10586 325 aaPredicted RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 CDH26Q8IXH8 852 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 C1orf87Q8N0U7 546 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 ZNF321PQ8N8H1 164 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 PATZ1Q9HBE1 687 aaKnown RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 GNG13Q9P2W3 67 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 CCL27Q9Y4X3 112 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 ABCD4O14678 606 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 ZNF354AO60765 605 aaPredicted RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 EML2O95834 649 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 KIR2DL1P43626 348 aaPredicted RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 HABP2Q14520 560 aaPredicted RBP16.29■□□□□ 0.2
COL18A1-204ENST00000400337 GSG1Q2KHT4 349 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 CARFQ8N187 725 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 FBXL14Q8N1E6 418 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 CMTM2Q8TAZ6 248 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 DLL4Q9NR61 685 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 COL4A5P29400 1685 aa16.29■□□□□ 0.2
COL18A1-204ENST00000400337 ALX3O95076 343 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 IAPPP10997 89 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 SUB1P53999 127 aaKnown RBP eCLIP16.28■□□□□ 0.24e-6■■□□□ 11.9
COL18A1-204ENST00000400337 GNB1P62873 340 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 RAB35Q15286 201 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 RGS7BPQ6MZT1 257 aaPredicted RBP16.28■□□□□ 0.2
COL18A1-204ENST00000400337 UBE3DQ7Z6J8 389 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 DTWD2Q8NBA8 298 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 APH1BQ8WW43 257 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 FBXW5Q969U6 566 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 MAGT1Q9H0U3 335 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 TRIP11Q15643 1979 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 TRAV17A0A0B4J275 112 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 PYCARD-AS1I3L0S3 204 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 MOSPD3O75425 235 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 SPRED2Q7Z698 418 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 NAA40Q86UY6 237 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 TMEM229BQ8NBD8 167 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 RELL2Q8NC24 303 aaPredicted RBP16.28■□□□□ 0.2
COL18A1-204ENST00000400337 S1PR3Q99500 378 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 TINAGL1Q9GZM7 467 aaPredicted RBP16.28■□□□□ 0.2
COL18A1-204ENST00000400337 CLN5O75503 358 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 MAGEB1P43366 347 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 P2RX3P56373 397 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 FOXC1Q12948 553 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 PNLIPRP3Q17RR3 467 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 C17orf107Q6ZR85 190 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 MCHR2Q969V1 340 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 C2orf50Q96LR7 162 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 QPCTLQ9NXS2 382 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 URGCP-MRPS24S4R325 110 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 E5RGE8 158 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 GZMKP49863 264 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 RHBDD2Q6NTF9 364 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 C15orf54Q8N8G6 183 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 PPP1R1CQ8WVI7 109 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 NDRG3Q9UGV2 375 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 NSG2Q9Y328 171 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 TMPRSS7Q7RTY8 843 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 C17orf47Q8NEP4 570 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 SLC35E1Q96K37 410 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 MTCH2Q9Y6C9 303 aa16.28■□□□□ 0.2
COL18A1-204ENST00000400337 KIAA1217Q5T5P2 1943 aa16.27■□□□□ 0.2
COL18A1-204ENST00000400337 H3BMH7 237 aa16.27■□□□□ 0.2
COL18A1-204ENST00000400337 C11orf91Q3C1V1 193 aa16.27■□□□□ 0.2
COL18A1-204ENST00000400337 WDR89Q96FK6 387 aaPredicted RBP16.27■□□□□ 0.2
COL18A1-204ENST00000400337 FUT7Q11130 342 aa16.27■□□□□ 0.2
COL18A1-204ENST00000400337 PDCD1Q15116 288 aa16.27■□□□□ 0.2
COL18A1-204ENST00000400337 LRRC3BQ96PB8 259 aa16.27■□□□□ 0.2
COL18A1-204ENST00000400337 TPPP3Q9BW30 176 aa16.27■□□□□ 0.2
COL18A1-204ENST00000400337 FAM122CQ6P4D5 195 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 LCN15Q6UWW0 184 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 SARGQ9BW04 601 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 ZFP64Q9NPA5 681 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 DLEC1Q9Y238 1755 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 SPINT1O43278 529 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 MEOX1P50221 254 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 SSPNQ14714 243 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 MRM1Q6IN84 353 aaKnown RBP16.27■□□□□ 0.19
COL18A1-204ENST00000400337 DRAM2Q6UX65 266 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 SPSB1Q96BD6 273 aa16.27■□□□□ 0.19
COL18A1-204ENST00000400337 GNPNAT1Q96EK6 184 aaPredicted RBP16.27■□□□□ 0.19
COL18A1-204ENST00000400337 CTLA4P16410 223 aa16.26■□□□□ 0.19
COL18A1-204ENST00000400337 CD80P33681 288 aa16.26■□□□□ 0.19
COL18A1-204ENST00000400337 RTL8BQ17RB0 113 aa16.26■□□□□ 0.19
COL18A1-204ENST00000400337 SMIM21Q3B7S5 101 aa16.26■□□□□ 0.19
COL18A1-204ENST00000400337 DEFB124Q8NES8 71 aa16.26■□□□□ 0.19
COL18A1-204ENST00000400337 EXTL1Q92935 676 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms