RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 APOA1P02647 267 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 HEXBP07686 556 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF708P17019 499 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CXCL2P19875 107 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CDK2P24941 298 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PSMA1P25786 263 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 CALRP27797 417 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 NAA10P41227 235 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 RPS7P62081 194 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 ACTC1P68032 377 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ACTA1P68133 377 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CDK10Q15131 360 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SF3A2Q15428 464 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 TRAM1Q15629 374 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 NSDHLQ15738 373 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 STK11Q15831 433 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 Q499Y3 187 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF324BQ6AW86 544 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 DGAT2L7PQ6IED9 249 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MTFR2Q6P444 385 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 DPY19L4Q7Z388 723 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 WDR86Q86TI4 376 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 DTX2Q86UW9 622 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 GPALPP1Q8IXQ4 340 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TMCO5AQ8N6Q1 288 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 BEND2Q8NDZ0 799 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 NOXO1Q8NFA2 376 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR5M1Q8NGP8 315 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR52N5Q8NH56 324 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CT55Q8WUE5 264 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 HPSE2Q8WWQ2 592 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ACOT12Q8WYK0 555 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 C11orf40Q8WZ69 217 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TMEM45BQ96B21 275 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CREB3L1Q96BA8 519 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 C5orf30Q96GV9 206 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 IFT27Q9BW83 186 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TM2D1Q9BX74 207 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 RNF121Q9H920 327 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SCPEP1Q9HB40 452 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 HRASLSQ9HDD0 168 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PNO1Q9NRX1 252 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 ALKBH4Q9NXW9 302 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SPRR3Q9UBC9 169 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 FLVCR2Q9UPI3 526 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 R4GMQ9 66 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 IGSF10Q6WRI0 2623 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CHD8Q9HCK8 2581 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ARID1AO14497 2285 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MUC6Q6W4X9 2439 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 A0A0A0MQY5 61 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PNMA8CA0A1B0GUJ8 204 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 RNF222A6NCQ9 220 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TVP23AA6NH52 213 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 A6NL46 340 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 A8MUA0 341 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SMLR1H3BR10 107 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 H7C417 338 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 M0R296 226 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 AKR7A2O43488 359 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 GPRIN2O60269 458 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 SERPINI2O75830 405 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 UBL3O95164 117 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TGM6O95932 706 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CD8AP01732 235 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 HLA-DPB1P04440 258 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF806P0C7X5 589 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PRF1P14222 555 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CPN1P15169 458 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ARSBP15848 533 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF3P17036 446 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF10P21506 573 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 CDAP32320 146 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 BRWD1-AS2P59051 145 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ACTA2P62736 377 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ACTG2P63267 376 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 HSF1Q00613 529 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PUDPQ08623 228 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 LINC00303Q3SY05 128 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF766Q5HY98 468 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 DCAF12L2Q5VW00 463 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 NSUN5P2Q63ZY6 315 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR5M10Q6IEU7 315 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF880Q6PDB4 577 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 PAPD4Q6PIY7 484 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 DEGS2Q6QHC5 323 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 LRRN1Q6UXK5 716 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 CEACAM19Q7Z692 300 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 MISPQ8IVT2 679 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 GALNT16Q8N428 558 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 EID2Q8N6I1 236 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 BHLHE23Q8NDY6 225 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TMEM104Q8NE00 496 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR8B12Q8NGG6 310 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 OR52I2Q8NH67 350 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 TRMT10AQ8TBZ6 339 aaKnown RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 GPR148Q8TDV2 347 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 ZNF486Q96H40 463 aaPredicted RBP1.98□□□□□ -2.09
VPS54-202ENST00000354504 FOXN4Q96NZ1 517 aa1.98□□□□□ -2.09
VPS54-202ENST00000354504 RBP7Q96R05 134 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms