RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ADGRL4Q9HBW9 690 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 RNF7Q9UBF6 113 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 RNF115Q9Y4L5 304 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 TRIM64BA6NI03 449 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 SPRY1O43609 319 aaPredicted RBP8.97□□□□□ -0.97
USP54-201ENST00000339859 PATE4P0C8F1 98 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 TPBGQ13641 420 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 FAM209AQ5JX71 171 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 GLYATL2Q8WU03 294 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 DMRTB1Q96MA1 342 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 PSD2Q9BQI7 771 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 ALG5Q9Y673 324 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 DEFA4P12838 97 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 ALDH3B1P43353 468 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 GSK3AP49840 483 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 STAC2Q6ZMT1 411 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 MUC20Q8N307 709 aaPredicted RBP8.97□□□□□ -0.97
USP54-201ENST00000339859 OR1K1Q8NGR3 316 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 EDARADDQ8WWZ3 215 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 GATA6Q92908 595 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 ZNF385AQ96PM9 386 aaKnown RBP8.97□□□□□ -0.97
USP54-201ENST00000339859 ISG20L2Q9H9L3 353 aaKnown RBP8.97□□□□□ -0.97
USP54-201ENST00000339859 NTN4Q9HB63 628 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 LSM5Q9Y4Y9 91 aaKnown RBP8.97□□□□□ -0.97
USP54-201ENST00000339859 KCNMB2Q9Y691 235 aa8.97□□□□□ -0.97
USP54-201ENST00000339859 CDC42EP2O14613 210 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 ST8SIA5O15466 376 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 CD1EP15812 388 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 LY6DQ14210 128 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 TSPO2Q5TGU0 170 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 TCTEX1D2Q8WW35 142 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 FBXW5Q969U6 566 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 FLVCR1Q9Y5Y0 555 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 ZSCAN5BA6NJL1 495 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 MSTNO14793 375 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 DXOO77932 396 aaKnown RBP8.96□□□□□ -0.97
USP54-201ENST00000339859 SLC35A2P78381 396 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 MRPS34P82930 218 aaKnown RBP8.96□□□□□ -0.97
USP54-201ENST00000339859 TCF15Q12870 199 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 OR8H1Q8NGG4 311 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 ZNF431Q8TF32 576 aaPredicted RBP8.96□□□□□ -0.97
USP54-201ENST00000339859 PPP1R3CQ9UQK1 317 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 hADV38S2A0JD32 116 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 ANKRD34BA5PLL1 514 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 SMPD2O60906 423 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 SC5DO75845 299 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 IGF2P01344 180 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 PMP2P02689 132 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 CCR9P51686 369 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 IL13RA1P78552 427 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 PRSS53Q2L4Q9 553 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 ZNF658BQ4V348 819 aaPredicted RBP8.96□□□□□ -0.97
USP54-201ENST00000339859 KRBOX4Q5JUW0 171 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 MOB1BQ7L9L4 216 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 CDC20BQ86Y33 519 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 SLC25A31Q9H0C2 315 aa8.96□□□□□ -0.97
USP54-201ENST00000339859 KIAA1671Q9BY89 1806 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 MAGEB4O15481 346 aaPredicted RBP8.96□□□□□ -0.98
USP54-201ENST00000339859 PRRX1P54821 245 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 C8orf82Q6P1X6 216 aaPredicted RBP8.96□□□□□ -0.98
USP54-201ENST00000339859 THSD4Q6ZMP0 1018 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 OR2W3Q7Z3T1 314 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 FAM58AQ8N1B3 248 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 ARHGEF39Q8N4T4 335 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 NFAM1Q8NET5 270 aaPredicted RBP8.96□□□□□ -0.98
USP54-201ENST00000339859 SLC25A40Q8TBP6 338 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 RHNO1Q9BSD3 238 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 RANBP3Q9H6Z4 567 aaPredicted RBP8.96□□□□□ -0.98
USP54-201ENST00000339859 AKIRIN1Q9H9L7 192 aaPredicted RBP8.96□□□□□ -0.98
USP54-201ENST00000339859 CEPT1Q9Y6K0 416 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 GABARAPH6UMI1 98 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 GABARAPO95166 117 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 SNCAP37840 140 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 RAB11AP62491 216 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 COMTD1Q86VU5 262 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 SLC35G3Q8N808 338 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 GALMQ96C23 342 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 CNTNAP3BQ96NU0 1288 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 ZNF552Q9H707 407 aaPredicted RBP8.96□□□□□ -0.98
USP54-201ENST00000339859 TDRD6O60522 2096 aaKnown RBP8.96□□□□□ -0.98
USP54-201ENST00000339859 ANKRD12Q6UB98 2062 aa8.96□□□□□ -0.98
USP54-201ENST00000339859 IFNA1P01562 189 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 MT-ND4P03905 459 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 ASAH2BP0C7U1 165 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 CBR1P16152 277 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 SUB1P53999 127 aaKnown RBP eCLIP8.95□□□□□ -0.98
USP54-201ENST00000339859 ATXN7L3Q14CW9 347 aaPredicted RBP8.95□□□□□ -0.98
USP54-201ENST00000339859 GABRA6Q16445 453 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 PLA1AQ53H76 456 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 WDR38Q5JTN6 314 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 OR2AE1Q8NHA4 323 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 STOML3Q8TAV4 291 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 SGK3Q96BR1 496 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 PRSS50Q9UI38 385 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 UGT2A1Q9Y4X1 527 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 MPZL1O95297 269 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 RAB13P51153 203 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 PHC2Q8IXK0 858 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 PLPPR2Q96GM1 343 aa8.95□□□□□ -0.98
USP54-201ENST00000339859 PLEKHA3Q9HB20 300 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms