RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZMAT1Q5H9K5 638 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 PHC2Q8IXK0 858 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 OR13C5Q8NGS8 318 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 PPP1R3EQ9H7J1 279 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 PLEKHA6Q9Y2H5 1048 aa18.89■□□□□ 0.61
SDC3-202ENST00000339394 ZNF816-ZNF321PA0A0X1KG74 233 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 A0A1B0GWJ7 208 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 SPRY3O43610 288 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 CST4P01036 141 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 RAF1P04049 648 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 TSTQ16762 297 aaKnown RBP18.88■□□□□ 0.61
SDC3-202ENST00000339394 SYT6Q5T7P8 510 aaPredicted RBP18.88■□□□□ 0.61
SDC3-202ENST00000339394 ZBTB37Q5TC79 503 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 KRT74Q7RTS7 529 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 OR13C3Q8NGS6 347 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 PIGTQ969N2 578 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 LURAP1Q96LR2 239 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 VRK1Q99986 396 aaPredicted RBP18.88■□□□□ 0.61
SDC3-202ENST00000339394 TMED9Q9BVK6 235 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 PAPOLGQ9BWT3 736 aaKnown RBP18.88■□□□□ 0.61
SDC3-202ENST00000339394 PLEKHA1Q9HB21 404 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 ZNF275Q9NSD4 429 aaPredicted RBP18.88■□□□□ 0.61
SDC3-202ENST00000339394 ENPP5Q9UJA9 477 aa18.88■□□□□ 0.61
SDC3-202ENST00000339394 H0YL77 283 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 MLNRO43193 412 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 OR2Z1Q8NG97 314 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 OR10AD1Q8NGE0 317 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 TSEN15Q8WW01 171 aaKnown RBP18.87■□□□□ 0.61
SDC3-202ENST00000339394 PIGCQ92535 297 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 FGGYQ96C11 551 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 ADAT3Q96EY9 351 aaPredicted RBP18.87■□□□□ 0.61
SDC3-202ENST00000339394 SLC22A4Q9H015 551 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 TPK1Q9H3S4 243 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 CXorf56Q9H5V9 222 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 VCX3AQ9NNX9 186 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 ZDHHC8Q9ULC8 765 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 DHDHQ9UQ10 334 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 POLQO75417 2590 aa18.87■□□□□ 0.61
SDC3-202ENST00000339394 ITPR2Q14571 2701 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 H7C417 338 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 IGHV1-46P01743 117 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 OCM2P0CE71 109 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 SOX2P48431 317 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 SSX1Q16384 188 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 MS4A15Q8N5U1 240 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 DVL3Q92997 716 aaPredicted RBP18.86■□□□□ 0.61
SDC3-202ENST00000339394 TMEM203Q969S6 136 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 MUL1Q969V5 352 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 C10orf35Q96D05 121 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 EDARQ9UNE0 448 aa18.86■□□□□ 0.61
SDC3-202ENST00000339394 ZNF850A8MQ14 1090 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 GNALP38405 381 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 GP2P55259 537 aaKnown RBP18.85■□□□□ 0.61
SDC3-202ENST00000339394 PRDX4Q13162 271 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 TMEM42Q69YG0 159 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 ELMOD3Q96FG2 381 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 TRBV5-5A0A0J9YX44 114 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 CCRL2O00421 344 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 GMDSO60547 372 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 ADH4P08319 380 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 Q499Y3 187 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 CLVS2Q5SYC1 327 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 TMEM106AQ96A25 262 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 OR14A2Q96R54 314 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 DIRC2Q96SL1 478 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 ADAT1Q9BUB4 502 aaKnown RBP18.85■□□□□ 0.61
SDC3-202ENST00000339394 RAB1BQ9H0U4 201 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 SF3B6Q9Y3B4 125 aaKnown RBP18.85■□□□□ 0.61
SDC3-202ENST00000339394 MPC1Q9Y5U8 109 aa18.85■□□□□ 0.61
SDC3-202ENST00000339394 NRASP01111 189 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 ZNF20P17024 532 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 JUNBP17275 347 aaPredicted RBP18.84■□□□□ 0.61
SDC3-202ENST00000339394 GABRA5P31644 462 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 RPS25P62851 125 aaKnown RBP18.84■□□□□ 0.61
SDC3-202ENST00000339394 CCL8P80075 99 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 INSL4Q14641 139 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 OR8G1Q15617 311 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 DMRTC1Q5HYR2 192 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 CEP78Q5JTW2 689 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 PARP16Q8N5Y8 322 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 UBASH3BQ8TF42 649 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 ITPKCQ96DU7 683 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 SORCS2Q96PQ0 1159 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 MRPS26Q9BYN8 205 aaKnown RBP18.84■□□□□ 0.61
SDC3-202ENST00000339394 NDUFB11Q9NX14 153 aa18.84■□□□□ 0.61
SDC3-202ENST00000339394 ANKRD61A6NGH8 418 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 F5H5P2 479 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 CD2P06729 351 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 DNASE1P24855 282 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 PCGF3Q3KNV8 242 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 FAM209AQ5JX71 171 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 SERPINA12Q8IW75 414 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 ZDHHC23Q8IYP9 409 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 PP6455Q8WZ26 134 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 CHST5Q9GZS9 411 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 GPR173Q9NS66 373 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 ZNF701Q9NV72 531 aaPredicted RBP18.83■□□□□ 0.6
SDC3-202ENST00000339394 NKIRAS2Q9NYR9 191 aa18.83■□□□□ 0.6
SDC3-202ENST00000339394 NOP16Q9Y3C1 178 aaKnown RBP18.83■□□□□ 0.6
SDC3-202ENST00000339394 DSCAMO60469 2012 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms