RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RBP2P50120 134 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SCAND1P57086 179 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CARD18P57730 90 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 IL10RAQ13651 578 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 KIAA0040Q15053 153 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 OR11H7Q8NGC8 314 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 OR10P1Q8NGE3 313 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 OR2AE1Q8NHA4 323 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 MS4A10Q96PG2 267 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 HIF1ANQ9NWT6 349 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CLCF1Q9UBD9 225 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 EXOGQ9Y2C4 368 aaKnown RBP10.37□□□□□ -0.75
VPS39-201ENST00000318006 TRAPPC1Q9Y5R8 145 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SLCO1B1Q9Y6L6 691 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 ATAD5Q96QE3 1844 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 A0A0A6YYD5 115 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 ANKRD20A5PA0PJZ0 165 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CD160O95971 181 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A6P0DMU7 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A5P0DMU8 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A7P0DMV0 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A8P0DMV1 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A9P0DMV2 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 RPS27P42677 84 aaKnown RBP10.37□□□□□ -0.75
VPS39-201ENST00000318006 BTG2P78543 158 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 DHODHQ02127 395 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 RPL18Q07020 188 aaKnown RBP10.37□□□□□ -0.75
VPS39-201ENST00000318006 PPP1R1AQ13522 171 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 LBHQ53QV2 105 aaPredicted RBP10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A2Q5DJT8 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A1Q5HYN5 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SEZ6L2Q6UXD5 910 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 RNF165Q6ZSG1 346 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 H2BFWTQ7Z2G1 175 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CT45A3Q8NHU0 189 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SLC39A7Q92504 469 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 PTP4A1Q93096 173 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 MVB12AQ96EY5 273 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 CHST11Q9NPF2 352 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 FPR2P25090 351 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 OPRM1P35372 400 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 PTTG1IPP53801 180 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 FAM53BQ14153 422 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 AGERQ15109 404 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 LTC4SQ16873 150 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 TUSC1Q2TAM9 212 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SLC35G3Q8N808 338 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 C1QTNF6Q9BXI9 259 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 MAGT1Q9H0U3 335 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 IDSB3KWA1 339 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 GSTZ1O43708 216 aaPredicted RBP10.37□□□□□ -0.75
VPS39-201ENST00000318006 EXT1Q16394 746 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 AWAT1Q58HT5 328 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 VWA2Q5GFL6 755 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 PRSS54Q6PEW0 395 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 ETFBKMTQ8IXQ9 262 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 OR52N5Q8NH56 324 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 C16orf52Q8NHV5 167 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SPACA5Q96QH8 159 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SOX7Q9BT81 388 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SLCO1C1Q9NYB5 712 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 NTMQ9P121 344 aa10.37□□□□□ -0.75
VPS39-201ENST00000318006 SPTY2D1-AS1A0A0U1RR47 76 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 CTDSPLO15194 276 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 PPM1DO15297 605 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 HSBP1O75506 76 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 GABRA2P47869 451 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 CD81P60033 236 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 UBE2G1P62253 170 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 CMTM2Q8TAZ6 248 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 ZNF707Q96C28 371 aaPredicted RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 NTNG2Q96CW9 530 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 FOXQ1Q9C009 403 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 ADGRL4Q9HBW9 690 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 GHRLQ9UBU3 117 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 hCG_1809904A0A1W2PP81 198 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 A0A1W2PR64 198 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 A0A1W2PRV1 198 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 C2CD4DB7Z1M9 353 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 M0QZK8 103 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 GGCTO75223 188 aaKnown RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 LY86O95711 162 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 HYAL1Q12794 435 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 PMS2P11Q13670 270 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 ZNF273Q14593 569 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 LANCL3Q6ZV70 420 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 NT5CQ8TCD5 201 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 TPPP3Q9BW30 176 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 NUDT9Q9BW91 350 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 SDHBP21912 280 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 ZNF92Q03936 586 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 INPP5JQ15735 1006 aaPredicted RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 ZNF79Q15937 498 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 PLA1AQ53H76 456 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 PLAC9Q5JTB6 97 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 C9orf135Q5VTT2 229 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 C8orf82Q6P1X6 216 aaPredicted RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 CD300LDQ6UXZ3 194 aa10.36□□□□□ -0.75
VPS39-201ENST00000318006 RPS19BP1Q86WX3 136 aaKnown RBP10.36□□□□□ -0.75
VPS39-201ENST00000318006 TCTEX1D1Q8N7M0 179 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms