RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TCTN3Q6NUS6 607 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 RBPMS2Q6ZRY4 209 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 KREMEN2Q8NCW0 462 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF519Q8TB69 540 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 LRFN3Q9BTN0 628 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 MRPS28Q9Y2Q9 187 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 TNCP24821 2201 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 CTNSO60931 367 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF217O75362 1048 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 GASTP01350 101 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 HSPB1P04792 205 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL3P09001 348 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SLC10A3P09131 477 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 RD3LP0DJH9 198 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FCGR2AP12318 317 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ID1P41134 155 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 VIPR2P41587 438 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 PDZD11Q5EBL8 140 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 H1FOOQ8IZA3 346 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 DNAJC5GQ8N7S2 189 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 OR5R1Q8NH85 324 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF480Q8WV37 535 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FAAP24Q9BTP7 215 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 VAMP8Q9BV40 100 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SFXN3Q9BWM7 321 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SLC22A13Q9Y226 551 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SOCS7O14512 581 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 CDK2AP2O75956 126 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 OMGP23515 440 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ARRB2P32121 409 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 CLDN6P56747 220 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 DLK2Q6UY11 383 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 C12orf54Q6X4T0 127 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 CDC20BQ86Y33 519 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 OR9Q2Q8NGE9 314 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 APIPQ96GX9 242 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FYTTD1Q96QD9 318 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 CABLES2Q9BTV7 478 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 R4GMQ9 66 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 GEMIN2O14893 280 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 AGPAT2O15120 278 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 PDE6DO43924 150 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 GABRA3P34903 492 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 NKX2-5P52952 324 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF684Q5T5D7 378 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SLC7A5P1Q8MH63 180 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 LINC00469Q8N7U9 141 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 PRRX2Q99811 253 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 NUDT22Q9BRQ3 303 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ABHD6Q9BV23 337 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 C20orf27Q9GZN8 174 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SOX21Q9Y651 276 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SERINC4A6NH21 518 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 MS4A18H0YCH9 400 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FCARP24071 287 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 OR2B8PP59922 312 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SPCS3P61009 180 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 RPS23P62266 143 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 MS4A18Q3C1V0 323 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ABHD17CQ6PCB6 329 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 DGAT2L6Q6ZPD8 337 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 RPS4Y2Q8TD47 263 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 C14orf79Q96F83 325 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 COL25A1Q9BXS0 654 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 PKIBQ9C010 78 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL22Q9NWU5 206 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 LOC102724200A0A096LPH7 203 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF816-ZNF321PA0A0X1KG74 233 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 GJB3O75712 270 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 PGA4P0DJD7 388 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 PGA5P0DJD9 388 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FUT4P22083 530 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 RAB6CQ53S08 254 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 TRIM61Q5EBN2 209 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 SAPCD1Q5SSQ6 148 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 DMKNQ6E0U4 476 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FCRLAQ7L513 359 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FA2HQ7L5A8 372 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 TSEN54Q7Z6J9 526 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 OR52E2Q8NGJ4 325 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 GRAMD2BQ96HH9 432 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 HHIPL1Q96JK4 782 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 AQP10Q96PS8 301 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 LPAR4Q99677 370 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 WDR61Q9GZS3 305 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 TXNIPQ9H3M7 391 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 GAL3ST2Q9H3Q3 398 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 RBPJLQ9UBG7 517 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 PRSS50Q9UI38 385 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 FCF1Q9Y324 198 aaKnown RBP4.76□□□□□ -1.65
SCN1A-201ENST00000303395 HS3ST3A1Q9Y663 406 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 DOCK1Q14185 1865 aa4.76□□□□□ -1.65
SCN1A-201ENST00000303395 A0A1B0GW15 77 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 LOC390937A0A1W2PQ73 354 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 FAM183AA6NL82 134 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 NTF3P20783 257 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 MMP11P24347 488 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 MICBQ29980 383 aa4.75□□□□□ -1.65
SCN1A-201ENST00000303395 BSXQ3C1V8 233 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms