RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TMEM127O75204 238 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 OR5H8P0DN80 308 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 DUSP1P28562 367 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 IL10RAQ13651 578 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 MKXQ8IYA7 352 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 ZNF610Q8N9Z0 462 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 A0A087WUJ7 227 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 MFSD2BA6NFX1 497 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 ZNF749O43361 778 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 EMC4Q5J8M3 183 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 TMEM164Q5U3C3 297 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 AADACL3Q5VUY0 350 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 MRPL21Q7Z2W9 205 aaKnown RBP13.78□□□□□ -0.2
SHH-201ENST00000297261 OTOSQ8NHW6 89 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 OR6C1Q96RD1 312 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 CDX2Q99626 313 aaPredicted RBP13.78□□□□□ -0.2
SHH-201ENST00000297261 AMDHD2Q9Y303 409 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 AP4M1O00189 453 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 ARPC3O15145 178 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 MT-ATP6P00846 226 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 CST4P01036 141 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 VSIG10L2P0DP72 767 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 RAC2P15153 192 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 TBPP20226 339 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 AWAT1Q58HT5 328 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 WDR5BQ86VZ2 330 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 FAM60AQ9NP50 221 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 KCNIP1Q9NZI2 227 aa13.78□□□□□ -0.2
SHH-201ENST00000297261 ALOX12BO75342 701 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 ERGP11308 486 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 HSD17B7P56937 341 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 EEF1A1P68104 462 aaKnown RBP13.77□□□□□ -0.2
SHH-201ENST00000297261 PCK2Q16822 640 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 BAGE3Q86Y29 109 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 BAGE2Q86Y30 109 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 RTN4IP1Q8WWV3 396 aaPredicted RBP13.77□□□□□ -0.2
SHH-201ENST00000297261 RPUSD4Q96CM3 377 aaKnown RBP13.77□□□□□ -0.2
SHH-201ENST00000297261 PRRX2Q99811 253 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 NECAP2Q9NVZ3 263 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 SLC5A6Q9Y289 635 aa13.77□□□□□ -0.2
SHH-201ENST00000297261 STRAPQ9Y3F4 350 aaKnown RBP13.77□□□□□ -0.2
SHH-201ENST00000297261 TRAV8-7A0A075B6U6 113 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 A8MXE2 369 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 SCRG1O75711 98 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 CST7O76096 145 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 PIGPP57054 158 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 MLF1P58340 268 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 DCAF7P61962 342 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 PLGLB1Q02325 96 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 CD200R1LQ6Q8B3 271 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 WDR88Q6ZMY6 472 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 H1FNTQ75WM6 255 aaPredicted RBP13.77□□□□□ -0.21
SHH-201ENST00000297261 ZSCAN4Q8NAM6 433 aaPredicted RBP13.77□□□□□ -0.21
SHH-201ENST00000297261 CADM4Q8NFZ8 388 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 OR51A2Q8NGJ7 313 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 OR51H1Q8NH63 302 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 R4GMQ9 66 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 PLSCR5A0PG75 271 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 CLDN1O95832 211 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 TRIM61Q5EBN2 209 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 PPP1R3BQ86XI6 285 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 TMEM104Q8NE00 496 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 ATOH1Q92858 354 aaPredicted RBP13.77□□□□□ -0.21
SHH-201ENST00000297261 KTI12Q96EK9 354 aaPredicted RBP13.77□□□□□ -0.21
SHH-201ENST00000297261 ZCCHC4Q9H5U6 513 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 FKRPQ9H9S5 495 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 PCOLCE2Q9UKZ9 415 aa13.77□□□□□ -0.21
SHH-201ENST00000297261 A0A1W2PPQ1 181 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 C7orf77A4D0Y5 90 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 PIAS2O75928 621 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 GLRA1P23415 457 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 PRAMEF20Q5VT98 475 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 TMEM268Q5VZI3 342 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 RHBDD1Q8TEB9 315 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 TXN2Q99757 166 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 PIGLQ9Y2B2 252 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 DSPPQ9NZW4 1301 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 HLA-DQB1P01920 261 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 HBG1P69891 147 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 HBG2P69892 147 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 VWA2Q5GFL6 755 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 OR8G2PQ6IF36 304 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 ZDHHC22Q8N966 263 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 LILRA5A6NI73 299 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 H3BP45 60 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 DUS4LO95620 317 aaKnown RBP13.76□□□□□ -0.21
SHH-201ENST00000297261 CRHP06850 196 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 SRPXP78539 464 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 NHLRC3Q5JS37 347 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 C9orf135Q5VTT2 229 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 TSEN54Q7Z6J9 526 aaKnown RBP13.76□□□□□ -0.21
SHH-201ENST00000297261 UBALD2Q8IYN6 164 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 ARRDC1Q8N5I2 433 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 GPR119Q8TDV5 335 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 RAB33BQ9H082 229 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 GHRLQ9UBU3 117 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 MRM2Q9UI43 246 aaKnown RBP13.76□□□□□ -0.21
SHH-201ENST00000297261 LAMP3Q9UQV4 416 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 LRP12Q9Y561 859 aa13.76□□□□□ -0.21
SHH-201ENST00000297261 MYLKQ15746 1914 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms