RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 GPX7Q96SL4 187 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 CDC6Q99741 560 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 RTBDNQ9BSG5 229 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 CNTNAP3Q9BZ76 1288 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 MYOZ1Q9NP98 299 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 UFSP2Q9NUQ7 469 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 SLC17A4Q9Y2C5 497 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 A0A0A6YYD4 124 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 IGKV1D-43A0A0B4J1Z2 117 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 NXPH3O95157 252 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 HCKP08631 526 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 ZNF708P17019 499 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 ANOS1P23352 680 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 TLE1Q04724 770 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 NSUN5P2Q63ZY6 315 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 WDFY1Q8IWB7 410 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 ARRDC1Q8N5I2 433 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 OR52N5Q8NH56 324 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 ABHD14AQ9BUJ0 271 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 NXF5Q9H1B4 397 aaKnown RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 LYRM4Q9HD34 91 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 RHBDD3Q9Y3P4 386 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 NUDT19A8MXV4 375 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 CD37P11049 281 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 IGFBP3P17936 291 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 GJA4P35212 333 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 PRSS12P56730 875 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 RPS23P62266 143 aaKnown RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 RPUSD3Q6P087 351 aaKnown RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 OR13G1Q8NGZ3 307 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 FLVCR1-AS1Q8TAF5 88 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 RAB7BQ96AH8 199 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 SLC22A18Q96BI1 424 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 ZNF775Q96BV0 537 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 C8orf44Q96CB5 159 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 MMABQ96EY8 250 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 AQP10Q96PS8 301 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 EGLN1Q9GZT9 426 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 CRLF2Q9HC73 371 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.75□□□□□ -0.37
SDC1-201ENST00000254351 GFOD1Q9NXC2 390 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 VSX1Q9NZR4 365 aaPredicted RBP12.75□□□□□ -0.37
SDC1-201ENST00000254351 GPR132Q9UNW8 380 aa12.75□□□□□ -0.37
SDC1-201ENST00000254351 MYO7BQ6PIF6 2116 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 TGIF2-C20orf24A0A0A6YYL0 155 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 NPIPB9F8W1W9 429 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 LDLRAD4O15165 306 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 CELA2BP08218 269 aaPredicted RBP12.74□□□□□ -0.37
SDC1-201ENST00000254351 PNMTP11086 282 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 SNCAP37840 140 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 NOVA1P51513 510 aaKnown RBP12.74□□□□□ -0.37
SDC1-201ENST00000254351 PNLIPRP3Q17RR3 467 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 Q3ZCU0 254 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 TEX30Q5JUR7 227 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 COL13A1Q5TAT6 717 aaPredicted RBP12.74□□□□□ -0.37
SDC1-201ENST00000254351 PLXDC2Q6UX71 529 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 NELFAQ9H3P2 528 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 PRTFDC1Q9NRG1 225 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 TREM2Q9NZC2 230 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 B3GALT1Q9Y5Z6 326 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 TRBV6-7A0A0A0MS04 114 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 ZNF726A6NNF4 738 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 CYB5BO43169 146 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 TMEM127O75204 238 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 CTNNB1P35222 781 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 GABRA4P48169 554 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 SNU13P55769 128 aaKnown RBP12.74□□□□□ -0.37
SDC1-201ENST00000254351 GPM6BQ13491 265 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 ZNF239Q16600 458 aaKnown RBP12.74□□□□□ -0.37
SDC1-201ENST00000254351 GAB4Q2WGN9 574 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 C9orf50Q5SZB4 431 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 CPEB2Q7Z5Q1 589 aaKnown RBP12.74□□□□□ -0.37
SDC1-201ENST00000254351 RSC1A1Q92681 617 aa12.74□□□□□ -0.37
SDC1-201ENST00000254351 MRPL24Q96A35 216 aaKnown RBP12.74□□□□□ -0.37
SDC1-201ENST00000254351 LINC01553A4QN01 128 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 CCDC85CA6NKD9 419 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 H0YL77 283 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 FOXS1O43638 330 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 UTS2O95399 124 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 CST4P01036 141 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 CXCL1P09341 107 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 RBMXP38159 391 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 CSNK1EP49674 416 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 CCL20P78556 96 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 NHLH2Q02577 135 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 GLO1Q04760 184 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 SOHLH1Q5JUK2 328 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 SLC43A2Q8N370 569 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 OR56B1Q8NGI3 324 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 ATG101Q9BSB4 218 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 HDHD3Q9BSH5 251 aaPredicted RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 ZNF700Q9H0M5 742 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 PHYHO14832 338 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 TRGC2P03986 189 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 TAGLN2P37802 199 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 FXYD4P59646 89 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 RPS21P63220 83 aaKnown RBP12.73□□□□□ -0.37
SDC1-201ENST00000254351 ZNF117Q03924 483 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 ZNF124Q15973 351 aa12.73□□□□□ -0.37
SDC1-201ENST00000254351 BRICD5Q6PL45 260 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms