RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	PDS5	Q04264	1277 aa		5.03	□□□□□ -1.6
HSP42	YDR171W	CDC45	Q08032	650 aa		5.03	□□□□□ -1.6
HSP42	YDR171W	MLP1	Q02455	1875 aa	Known RBP	5.03	□□□□□ -1.6
HSP42	YDR171W	IQG1	Q12280	1495 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	DCG1	P32460	244 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	YEL1	P34225	687 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	VPS27	P40343	622 aa	Known RBP	5.02	□□□□□ -1.61
HSP42	YDR171W	BNA2	P47125	453 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	MRPS35	P53292	345 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	RPN7	Q06103	429 aa	Known RBP	5.02	□□□□□ -1.61
HSP42	YDR171W	ENB1	Q08299	606 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	GIN4	Q12263	1142 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	GPR1	Q12361	961 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	MMS1	Q06211	1407 aa		5.02	□□□□□ -1.61
HSP42	YDR171W	QCR6	P00127	147 aa		5.01	□□□□□ -1.61
HSP42	YDR171W	PMA1	P05030	918 aa	Known RBP	5.01	□□□□□ -1.61
HSP42	YDR171W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	5.01	□□□□□ -1.61	not detected
HSP42	YDR171W	CTF13	P35203	478 aa		5.01	□□□□□ -1.61
HSP42	YDR171W	PAF1	P38351	445 aa		5.01	□□□□□ -1.61
HSP42	YDR171W	MGS1	P40151	587 aa		5.01	□□□□□ -1.61
HSP42	YDR171W	YNR029C	P53729	429 aa	Known RBP	5.01	□□□□□ -1.61
HSP42	YDR171W	GUD1	Q07729	489 aa		5.01	□□□□□ -1.61
HSP42	YDR171W	THI73	Q07904	523 aa		5.01	□□□□□ -1.61
HSP42	YDR171W	TRM11	Q12463	433 aa		5.01	□□□□□ -1.61
HSP42	YDR171W	YLR415C	O13578	112 aa		5	□□□□□ -1.61
HSP42	YDR171W	YCR015C	P25616	317 aa		5	□□□□□ -1.61
HSP42	YDR171W	YRB30	P53107	440 aa	Predicted RBP	5	□□□□□ -1.61
HSP42	YDR171W	NTO1	Q12311	748 aa		5	□□□□□ -1.61
HSP42	YDR171W	RPO21	P04050	1733 aa	Known RBP	5	□□□□□ -1.61
HSP42	YDR171W	NUP145	P49687	1317 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	NTE1	Q04958	1679 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	PDR12	Q02785	1511 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	ROX1	P25042	368 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	NGG1	P32494	702 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	TYS1	P36421	394 aa	Known RBP	4.99	□□□□□ -1.61
HSP42	YDR171W	FKH2	P41813	862 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	BUL1	P48524	976 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	ERG5	P54781	538 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	IOC4	Q04213	475 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	COG8	Q04632	607 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	CDC25	P04821	1589 aa		4.99	□□□□□ -1.61
HSP42	YDR171W	YOR093C	Q12275	1648 aa		4.98	□□□□□ -1.61
HSP42	YDR171W	CCR4	P31384	837 aa	Known RBP	4.98	□□□□□ -1.61
HSP42	YDR171W	NRG1	Q03125	231 aa		4.98	□□□□□ -1.61
HSP42	YDR171W	TRP4	P07285	380 aa	Predicted RBP	4.97	□□□□□ -1.61
HSP42	YDR171W	HRR25	P29295	494 aa	Known RBP	4.97	□□□□□ -1.61
HSP42	YDR171W	YKR018C	P36114	725 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	SIC1	P38634	284 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	PCL10	P53124	433 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	YBP2	P53169	641 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	ORC4	P54791	529 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	ARP4	P80428	489 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	UME1	Q03010	460 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	BUD21	Q08492	214 aa	Predicted RBP	4.97	□□□□□ -1.61
HSP42	YDR171W	TRM13	Q12383	476 aa		4.97	□□□□□ -1.61
HSP42	YDR171W	PRP19	P32523	503 aa	Known RBP	4.96	□□□□□ -1.62
HSP42	YDR171W	DEF1	P35732	738 aa	Known RBP	4.96	□□□□□ -1.62
HSP42	YDR171W	MIP6	P38760	659 aa	Known RBP	4.96	□□□□□ -1.62
HSP42	YDR171W	YJR096W	P47137	282 aa		4.96	□□□□□ -1.62
HSP42	YDR171W	PMT3	P47190	753 aa		4.96	□□□□□ -1.62
HSP42	YDR171W	PRP31	P49704	494 aa	Predicted RBP	4.96	□□□□□ -1.62
HSP42	YDR171W	YGR237C	P50089	785 aa		4.96	□□□□□ -1.62
HSP42	YDR171W	AIM39	Q08223	395 aa		4.96	□□□□□ -1.62
HSP42	YDR171W	TGL5	Q12043	749 aa		4.96	□□□□□ -1.62
HSP42	YDR171W	RVB2	Q12464	471 aa	Known RBP	4.96	□□□□□ -1.62
HSP42	YDR171W	DNF2	Q12675	1612 aa		4.96	□□□□□ -1.62
HSP42	YDR171W	TSR4	P25040	408 aa		4.95	□□□□□ -1.62
HSP42	YDR171W	EFT1	P32324	842 aa	Known RBP	4.95	□□□□□ -1.62
HSP42	YDR171W	TRM2	P33753	639 aa		4.95	□□□□□ -1.62
HSP42	YDR171W	CKB2	P38930	258 aa		4.95	□□□□□ -1.62
HSP42	YDR171W	FUN12	P39730	1002 aa	Known RBP	4.95	□□□□□ -1.62
HSP42	YDR171W	GPG1	P53130	126 aa		4.95	□□□□□ -1.62
HSP42	YDR171W	LEE1	Q02799	301 aa	Known RBP	4.95	□□□□□ -1.62
HSP42	YDR171W	EDE1	P34216	1381 aa		4.94	□□□□□ -1.62
HSP42	YDR171W	NUP157	P40064	1391 aa	Known RBP	4.94	□□□□□ -1.62
HSP42	YDR171W	ADE2	P21264	571 aa	Known RBP	4.94	□□□□□ -1.62
HSP42	YDR171W	ERG4	P25340	473 aa		4.94	□□□□□ -1.62
HSP42	YDR171W	UBP12	P39538	1254 aa		4.94	□□□□□ -1.62
HSP42	YDR171W	YEN1	P40028	759 aa		4.94	□□□□□ -1.62
HSP42	YDR171W	KIN4	Q01919	800 aa		4.94	□□□□□ -1.62
HSP42	YDR171W	MTQ2	Q03920	221 aa	Predicted RBP	4.94	□□□□□ -1.62
HSP42	YDR171W	YLR040C	Q07988	224 aa		4.94	□□□□□ -1.62
HSP42	YDR171W	FAP7	Q12055	197 aa	Predicted RBP	4.94	□□□□□ -1.62
HSP42	YDR171W	SEC7	P11075	2009 aa	Known RBP	4.94	□□□□□ -1.62
HSP42	YDR171W	CHC1	P22137	1653 aa	Known RBP	4.93	□□□□□ -1.62
HSP42	YDR171W	SPO14	P36126	1683 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	TUB2	P02557	457 aa	Known RBP	4.93	□□□□□ -1.62
HSP42	YDR171W	LTE1	P07866	1435 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	MET3	P08536	511 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	PMI40	P29952	429 aa	Known RBP	4.93	□□□□□ -1.62
HSP42	YDR171W	GRX4	P32642	244 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	YBR259W	P38338	688 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	SUL1	P38359	859 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	TDA3	P38758	523 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	ELO3	P40319	345 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	MUP1	P50276	574 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	DLT1	Q04216	342 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	DCS2	Q12123	353 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	RTC1	Q08281	1341 aa		4.93	□□□□□ -1.62
HSP42	YDR171W	RAV1	P47104	1357 aa		4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 58.6 ms