RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	HOXA10	P31260	410 aa	Predicted RBP	12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	SEC62	Q99442	399 aa	Known RBP	12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	ANKRD2	Q9GZV1	360 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	HMG20B	Q9P0W2	317 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	CYP2E1	P05181	493 aa	Predicted RBP	12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	ARID4A	P29374	1257 aa	Predicted RBP	12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	PDE6B	P35913	854 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	SLC4A3	P48751	1232 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	RASGRF1	Q13972	1273 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	TXNRD3	Q86VQ6	643 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	RUFY2	Q8WXA3	655 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	FAM84B	Q96KN1	310 aa	Predicted RBP	12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	KIF2C	Q99661	725 aa		12.65	□□□□□ -0.38
NECAP1-223	ENST00000640091	ZNF804B	A4D1E1	1349 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	HIP1	O00291	1037 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	EIF5B	O60841	1220 aa	Known RBP	12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	BBOX1	O75936	387 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	UQCRFS1P1	P0C7P4	283 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	SPATA5	Q8NB90	893 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	CRAMP1	Q96RY5	1269 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	GPSM2	P81274	684 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	CAVIN4	Q5BKX8	364 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	OLFM4	Q6UX06	510 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	KIAA1211	Q6ZU35	1233 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	VPS37D	Q86XT2	251 aa		12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.64	□□□□□ -0.39	4e-7	■■■□□ 15.7
NECAP1-223	ENST00000640091	ZNF622	Q969S3	477 aa	Known RBP eCLIP	12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	GPR101	Q96P66	508 aa	Predicted RBP	12.64	□□□□□ -0.39
NECAP1-223	ENST00000640091	ZBTB7A	O95365	584 aa		12.63	□□□□□ -0.39
NECAP1-223	ENST00000640091	PTH1R	Q03431	593 aa		12.63	□□□□□ -0.39
NECAP1-223	ENST00000640091	CCDC129	Q6ZRS4	1044 aa		12.63	□□□□□ -0.39
NECAP1-223	ENST00000640091	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.63	□□□□□ -0.39
NECAP1-223	ENST00000640091	LSG1	Q9H089	658 aa	Known RBP	12.63	□□□□□ -0.39
NECAP1-223	ENST00000640091	PIH1D3	Q9NQM4	214 aa	Known RBP	12.63	□□□□□ -0.39
NECAP1-223	ENST00000640091	AK9	Q5TCS8	1911 aa		12.63	□□□□□ -0.39
NECAP1-223	ENST00000640091	NPR1	P16066	1061 aa		12.62	□□□□□ -0.39
NECAP1-223	ENST00000640091	CHRNA5	P30532	468 aa		12.62	□□□□□ -0.39
NECAP1-223	ENST00000640091	C2CD5	Q86YS7	1000 aa		12.62	□□□□□ -0.39
NECAP1-223	ENST00000640091	RNF113A	O15541	343 aa	Known RBP	12.62	□□□□□ -0.39
NECAP1-223	ENST00000640091	IDH1	O75874	414 aa	Known RBP	12.62	□□□□□ -0.39
NECAP1-223	ENST00000640091	MASTL	Q96GX5	879 aa		12.62	□□□□□ -0.39
NECAP1-223	ENST00000640091	XDH	P47989	1333 aa		12.62	□□□□□ -0.39
NECAP1-223	ENST00000640091		H0YIN7	160 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	PPEF1	O14829	653 aa	Predicted RBP	12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	ALDH1B1	P30837	517 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	R3HDM1	Q15032	1099 aa	Known RBP	12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	FBXO33	Q7Z6M2	555 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	PALD1	Q9ULE6	856 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	FRAT2	O75474	233 aa	Predicted RBP	12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	HIBADH	P31937	336 aa	Known RBP	12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	WASHC4	Q2M389	1173 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	MCMDC2	Q4G0Z9	681 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	SLC9C2	Q5TAH2	1124 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	DDRGK1	Q96HY6	314 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	GNL3L	Q9NVN8	582 aa	Known RBP	12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	LEMD3	Q9Y2U8	911 aa		12.61	□□□□□ -0.39
NECAP1-223	ENST00000640091	NRXN2	Q9P2S2	1712 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	UFL1	O94874	794 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	TTF1	Q15361	905 aa	Predicted RBP	12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	SP8	Q8IXZ3	490 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	SLC16A10	Q8TF71	515 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	OSBP2	Q969R2	916 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	POLL	Q9UGP5	575 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	JAG2	Q9Y219	1238 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	ANKRD31	Q8N7Z5	1873 aa		12.6	□□□□□ -0.39
NECAP1-223	ENST00000640091	ZMYM1	Q5SVZ6	1142 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	PUS7L	Q9H0K6	701 aa	Known RBP	12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	ABCF2	Q9UG63	623 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	GGA1	Q9UJY5	639 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	WWC3	Q9ULE0	1092 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	ATP6V0A2	Q9Y487	856 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	RAD50	Q92878	1312 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	C6orf229	H3BNL8	230 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	HSPA4	P34932	840 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	TBC1D16	Q8TBP0	767 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	HELLS	Q9NRZ9	838 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	CCDC171	Q6TFL3	1326 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	IRS2	Q9Y4H2	1338 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	AKAP11	Q9UKA4	1901 aa		12.59	□□□□□ -0.39
NECAP1-223	ENST00000640091	PSD	A5PKW4	1024 aa	Predicted RBP	12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091		M0R2C6	588 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	MCC	P23508	829 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	VPS53	Q5VIR6	699 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	RASEF	Q8IZ41	740 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	MAP4K1	Q92918	833 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	LRP2BP	Q9P2M1	347 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	RFX7	Q2KHR2	1363 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	MED23	Q9ULK4	1368 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	ATP2B4	P23634	1241 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	ADD2	P35612	726 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	LRRFIP1	Q32MZ4	808 aa	Known RBP	12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	PRPF40B	Q6NWY9	871 aa	Known RBP	12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	TBC1D2	Q9BYX2	928 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	PODXL2	Q9NZ53	605 aa		12.58	□□□□□ -0.4
NECAP1-223	ENST00000640091	DAXX	Q9UER7	740 aa	Predicted RBP	12.58	□□□□□ -0.4

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