RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 MMP14P50281 582 aa22.9■■□□□ 1.26
CIITA-215ENST00000637439 CCT4P50991 539 aaKnown RBP22.9■■□□□ 1.26
CIITA-215ENST00000637439 CWF19L2Q2TBE0 894 aaKnown RBP22.9■■□□□ 1.26
CIITA-215ENST00000637439 TWISTNBQ3B726 338 aaPredicted RBP22.9■■□□□ 1.26
CIITA-215ENST00000637439 OGFOD1Q8N543 542 aa22.9■■□□□ 1.26
CIITA-215ENST00000637439 RNF186Q9NXI6 227 aa22.9■■□□□ 1.26
CIITA-215ENST00000637439 SPEF2Q9C093 1822 aa22.89■■□□□ 1.26
CIITA-215ENST00000637439 PAPPA2Q9BXP8 1791 aa22.89■■□□□ 1.26
CIITA-215ENST00000637439 H7C1W4 665 aa22.89■■□□□ 1.25
CIITA-215ENST00000637439 TRPA1O75762 1119 aa22.89■■□□□ 1.25
CIITA-215ENST00000637439 IGHMBP2P38935 993 aaKnown RBP22.89■■□□□ 1.25
CIITA-215ENST00000637439 CSRNP1Q96S65 589 aa22.89■■□□□ 1.25
CIITA-215ENST00000637439 COA1Q9GZY4 146 aa22.89■■□□□ 1.25
CIITA-215ENST00000637439 LEMD3Q9Y2U8 911 aa22.89■■□□□ 1.25
CIITA-215ENST00000637439 SLC4A2P04920 1241 aa22.88■■□□□ 1.25
CIITA-215ENST00000637439 STRIP1Q5VSL9 837 aa22.88■■□□□ 1.25
CIITA-215ENST00000637439 UBE3BQ7Z3V4 1068 aa22.88■■□□□ 1.25
CIITA-215ENST00000637439 WWC1Q8IX03 1113 aa22.88■■□□□ 1.25
CIITA-215ENST00000637439 IL16Q14005 1332 aa22.87■■□□□ 1.25
CIITA-215ENST00000637439 DACT2Q5SW24 774 aa22.87■■□□□ 1.25
CIITA-215ENST00000637439 RASAL3Q86YV0 1011 aa22.87■■□□□ 1.25
CIITA-215ENST00000637439 ANKRD2Q9GZV1 360 aa22.87■■□□□ 1.25
CIITA-215ENST00000637439 WTIPA6NIX2 430 aaPredicted RBP22.86■■□□□ 1.25
CIITA-215ENST00000637439 NCBP3Q53F19 620 aaKnown RBP22.86■■□□□ 1.25
CIITA-215ENST00000637439 PLA2G12BQ9BX93 195 aa22.86■■□□□ 1.25
CIITA-215ENST00000637439 MYH16Q9H6N6 1097 aa22.86■■□□□ 1.25
CIITA-215ENST00000637439 GCKRQ14397 625 aa22.85■■□□□ 1.25
CIITA-215ENST00000637439 G2E3Q7L622 706 aa22.85■■□□□ 1.25
CIITA-215ENST00000637439 FBXW7Q969H0 707 aa22.85■■□□□ 1.25
CIITA-215ENST00000637439 MPHOSPH8Q99549 860 aa22.85■■□□□ 1.25
CIITA-215ENST00000637439 ITGA6P23229 1130 aa22.84■■□□□ 1.25
CIITA-215ENST00000637439 NF2P35240 595 aa22.84■■□□□ 1.25
CIITA-215ENST00000637439 NBPF9Q3BBW0 867 aa22.84■■□□□ 1.25
CIITA-215ENST00000637439 ZNF804BA4D1E1 1349 aa22.83■■□□□ 1.25
CIITA-215ENST00000637439 FLIIQ13045 1269 aa22.83■■□□□ 1.25
CIITA-215ENST00000637439 ZNF646O15015 1829 aaPredicted RBP22.82■■□□□ 1.24
CIITA-215ENST00000637439 CACNA1FO60840 1977 aa22.82■■□□□ 1.24
CIITA-215ENST00000637439 WNT10BO00744 389 aa22.82■■□□□ 1.24
CIITA-215ENST00000637439 CSF1RP07333 972 aa22.82■■□□□ 1.24
CIITA-215ENST00000637439 FKBP5Q13451 457 aaPredicted RBP22.82■■□□□ 1.24
CIITA-215ENST00000637439 TTLL5Q6EMB2 1281 aa22.82■■□□□ 1.24
CIITA-215ENST00000637439 LINS1Q8NG48 757 aa22.82■■□□□ 1.24
CIITA-215ENST00000637439 DNAAF4Q8WXU2 420 aa22.82■■□□□ 1.24
CIITA-215ENST00000637439 HDAC9Q9UKV0 1011 aa22.82■■□□□ 1.24
CIITA-215ENST00000637439 TTLL12Q14166 644 aaPredicted RBP22.81■■□□□ 1.24
CIITA-215ENST00000637439 TXNRD3Q86VQ6 643 aa22.81■■□□□ 1.24
CIITA-215ENST00000637439 MXD3Q9BW11 206 aa22.81■■□□□ 1.24
CIITA-215ENST00000637439 UBE2Q2LH0YL09 131 aa22.8■■□□□ 1.24
CIITA-215ENST00000637439 KCNJ4P48050 445 aa22.8■■□□□ 1.24
CIITA-215ENST00000637439 CASP7P55210 303 aa22.8■■□□□ 1.24
CIITA-215ENST00000637439 CTU1Q7Z7A3 348 aaKnown RBP22.8■■□□□ 1.24
CIITA-215ENST00000637439 SCAF8Q9UPN6 1271 aaKnown RBP22.8■■□□□ 1.24
CIITA-215ENST00000637439 CCDC184Q52MB2 194 aa22.79■■□□□ 1.24
CIITA-215ENST00000637439 PRAMEF18Q5VWM3 479 aa22.79■■□□□ 1.24
CIITA-215ENST00000637439 MOB2Q70IA6 237 aa22.79■■□□□ 1.24
CIITA-215ENST00000637439 APOBEC3FQ8IUX4 373 aaKnown RBP22.79■■□□□ 1.24
CIITA-215ENST00000637439 ANKRD18BA2A2Z9 1011 aa22.78■■□□□ 1.24
CIITA-215ENST00000637439 SASH1O94885 1247 aa22.77■■□□□ 1.24
CIITA-215ENST00000637439 GTF2IP78347 998 aa22.77■■□□□ 1.24
CIITA-215ENST00000637439 CHRNDQ07001 517 aa22.77■■□□□ 1.24
CIITA-215ENST00000637439 ARMC9Q7Z3E5 817 aa22.77■■□□□ 1.24
CIITA-215ENST00000637439 KIAA0825Q8IV33 1275 aa22.77■■□□□ 1.24
CIITA-215ENST00000637439 FANCIQ9NVI1 1328 aa22.77■■□□□ 1.24
CIITA-215ENST00000637439 TM4SF4P48230 202 aa22.76■■□□□ 1.23
CIITA-215ENST00000637439 WDR63Q8IWG1 891 aa22.76■■□□□ 1.23
CIITA-215ENST00000637439 KLRK1P26718 216 aa22.75■■□□□ 1.23
CIITA-215ENST00000637439 PKN2Q16513 984 aaKnown RBP22.75■■□□□ 1.23
CIITA-215ENST00000637439 CD209Q9NNX6 404 aa22.75■■□□□ 1.23
CIITA-215ENST00000637439 COL1A1P02452 1464 aaPredicted RBP22.74■■□□□ 1.23
CIITA-215ENST00000637439 VAMP4O75379 141 aa22.74■■□□□ 1.23
CIITA-215ENST00000637439 SLC34A2O95436 690 aa22.74■■□□□ 1.23
CIITA-215ENST00000637439 SREBF2Q12772 1141 aa22.74■■□□□ 1.23
CIITA-215ENST00000637439 IFIT5Q13325 482 aaKnown RBP22.74■■□□□ 1.23
CIITA-215ENST00000637439 C15orf52Q6ZUT6 534 aaKnown RBP22.74■■□□□ 1.23
CIITA-215ENST00000637439 ZBED3Q96IU2 234 aaPredicted RBP22.74■■□□□ 1.23
CIITA-215ENST00000637439 DLGAP5Q15398 846 aa22.73■■□□□ 1.23
CIITA-215ENST00000637439 NOM1Q5C9Z4 860 aaKnown RBP22.73■■□□□ 1.23
CIITA-215ENST00000637439 ZNF804AQ7Z570 1209 aa22.72■■□□□ 1.23
CIITA-215ENST00000637439 MTMR14Q8NCE2 650 aa22.72■■□□□ 1.23
CIITA-215ENST00000637439 MRS2Q9HD23 443 aa22.72■■□□□ 1.23
CIITA-215ENST00000637439 TNRC18O15417 2968 aaPredicted RBP22.71■■□□□ 1.23
CIITA-215ENST00000637439 TBC1D8O95759 1140 aa22.71■■□□□ 1.23
CIITA-215ENST00000637439 FOXO4P98177 505 aa22.71■■□□□ 1.23
CIITA-215ENST00000637439 PTPN12Q05209 780 aaKnown RBP22.71■■□□□ 1.23
CIITA-215ENST00000637439 ZNF296Q8WUU4 475 aaPredicted RBP22.71■■□□□ 1.23
CIITA-215ENST00000637439 CHMP3Q9Y3E7 222 aa22.71■■□□□ 1.23
CIITA-215ENST00000637439 TAF5LO75529 589 aa22.7■■□□□ 1.22
CIITA-215ENST00000637439 SOX10P56693 466 aa22.7■■□□□ 1.22
CIITA-215ENST00000637439 FKBP1AP62942 108 aaKnown RBP22.7■■□□□ 1.22
CIITA-215ENST00000637439 EXOSC9Q06265 439 aaKnown RBP22.7■■□□□ 1.22
CIITA-215ENST00000637439 LDLRAD1Q5T700 205 aa22.7■■□□□ 1.22
CIITA-215ENST00000637439 DEFB129Q9H1M3 183 aa22.7■■□□□ 1.22
CIITA-215ENST00000637439 PPP2R3BQ9Y5P8 575 aa22.7■■□□□ 1.22
CIITA-215ENST00000637439 IRS2Q9Y4H2 1338 aa22.7■■□□□ 1.22
CIITA-215ENST00000637439 MYO1BO43795 1136 aa22.69■■□□□ 1.22
CIITA-215ENST00000637439 IL1R1P14778 569 aa22.69■■□□□ 1.22
CIITA-215ENST00000637439 PRKG1Q13976 671 aa22.69■■□□□ 1.22
CIITA-215ENST00000637439 BEND3Q5T5X7 828 aa22.69■■□□□ 1.22
CIITA-215ENST00000637439 HELBQ8NG08 1087 aaPredicted RBP22.69■■□□□ 1.22
CIITA-215ENST00000637439 CFHR5Q9BXR6 569 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms