RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 CRACR2AQ9BSW2 395 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 PCDHA7Q9UN72 937 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 ALDH1L1O75891 902 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 SLFN14P0C7P3 912 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 DACH1Q9UI36 760 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 AMOTL2Q9Y2J4 779 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 ZNF213O14771 459 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 ADKP55263 362 aaKnown RBP12.7□□□□□ -0.38
CLN3-244ENST00000636147 MYL5Q02045 173 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 SCRN1Q12765 414 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 MTX1Q13505 466 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 SYCP1Q15431 976 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 IPO4Q8TEX9 1081 aaKnown RBP12.7□□□□□ -0.38
CLN3-244ENST00000636147 ALG1Q9BT22 464 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 RABEP2Q9H5N1 569 aa12.7□□□□□ -0.38
CLN3-244ENST00000636147 FLT4P35916 1363 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 BEND3Q5T5X7 828 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 MTMR7Q9Y216 660 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 ZNF569Q5MCW4 686 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 LMBR1LQ6UX01 489 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 PAXIP1Q6ZW49 1069 aaPredicted RBP12.69□□□□□ -0.38
CLN3-244ENST00000636147 FUCA2Q9BTY2 467 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 AFMP43652 599 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 ZC3H6P61129 1189 aaKnown RBP12.69□□□□□ -0.38
CLN3-244ENST00000636147 SMARCC1Q92922 1105 aaPredicted RBP12.69□□□□□ -0.38
CLN3-244ENST00000636147 IMPACTQ9P2X3 320 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 TAF6LQ9Y6J9 622 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 CEP152O94986 1710 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 MAP3K5Q99683 1374 aa12.69□□□□□ -0.38
CLN3-244ENST00000636147 ATP1A3P13637 1013 aa12.68□□□□□ -0.38
CLN3-244ENST00000636147 TRIM22Q8IYM9 498 aa12.68□□□□□ -0.38
CLN3-244ENST00000636147 GOLGA6L9A6NEM1 432 aa12.68□□□□□ -0.38
CLN3-244ENST00000636147 PRC1O43663 620 aa12.68□□□□□ -0.38
CLN3-244ENST00000636147 KIF1BO60333 1816 aa12.68□□□□□ -0.38
CLN3-244ENST00000636147 PATL2C9JE40 543 aaKnown RBP12.68□□□□□ -0.38
CLN3-244ENST00000636147 ANKRD65E5RJM6 399 aa12.68□□□□□ -0.38
CLN3-244ENST00000636147 TAF5LO75529 589 aa12.68□□□□□ -0.38
CLN3-244ENST00000636147 TRMT44Q8IYL2 757 aaKnown RBP12.68□□□□□ -0.38
CLN3-244ENST00000636147 NUP88Q99567 741 aaPredicted RBP12.68□□□□□ -0.38
CLN3-244ENST00000636147 WDHD1O75717 1129 aaPredicted RBP12.67□□□□□ -0.38
CLN3-244ENST00000636147 CDKL5O76039 1030 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 IRX3P78415 501 aaPredicted RBP12.67□□□□□ -0.38
CLN3-244ENST00000636147 RESTQ13127 1097 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 TULP4Q9NRJ4 1543 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 SPHKAPQ2M3C7 1700 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 CYP21A2P08686 494 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 CCDC57Q2TAC2 916 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 GDAP1L1Q96MZ0 367 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 SLC26A6Q9BXS9 759 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 GBP3Q9H0R5 595 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 CENPHQ9H3R5 247 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 VIRMAQ69YN4 1812 aaKnown RBP12.67□□□□□ -0.38
CLN3-244ENST00000636147 CCDC175P0C221 793 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 GTF2E1P29083 439 aaPredicted RBP12.67□□□□□ -0.38
CLN3-244ENST00000636147 IARSP41252 1262 aaKnown RBP12.67□□□□□ -0.38
CLN3-244ENST00000636147 PROSER3Q2NL68 480 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 ANKRD13DQ6ZTN6 518 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 CLIC4Q9Y696 253 aa12.67□□□□□ -0.38
CLN3-244ENST00000636147 RNF17Q9BXT8 1623 aaKnown RBP12.66□□□□□ -0.38
CLN3-244ENST00000636147 METAP2P50579 478 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLN3-244ENST00000636147 PNOCQ13519 176 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 TOB2Q14106 344 aaPredicted RBP12.66□□□□□ -0.38
CLN3-244ENST00000636147 NAA16Q6N069 864 aaPredicted RBP12.66□□□□□ -0.38
CLN3-244ENST00000636147 GJB4Q9NTQ9 266 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 PAG1Q9NWQ8 432 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 HOXC9P31274 260 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 DNA2P51530 1060 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 NLRP12P59046 1061 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 EIF4A1P60842 406 aaKnown RBP12.66□□□□□ -0.38
CLN3-244ENST00000636147 SLFNL1Q499Z3 407 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 ANO1Q5XXA6 986 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 KIAA1328Q86T90 577 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 GOLPH3LQ9H4A5 285 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 CTAGE15A4D2H0 777 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 CTAGE8P0CG41 777 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 CDC25BP30305 580 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 CHMP4BP1P59074 171 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 ZNF827Q17R98 1081 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 LONRF3Q496Y0 759 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 CTAGE6Q86UF2 777 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 CTAGE4Q8IX94 777 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 FANCLQ9NW38 375 aa12.66□□□□□ -0.38
CLN3-244ENST00000636147 GOLGA8AA7E2F4 631 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 TUBB4AP04350 444 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 MATR3P43243 847 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLN3-244ENST00000636147 ADALQ6DHV7 355 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 MICALL1Q8N3F8 863 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 RCOR1Q9UKL0 485 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 CHGBP05060 677 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 DNAJC21Q5F1R6 531 aaKnown RBP12.65□□□□□ -0.38
CLN3-244ENST00000636147 CTR9Q6PD62 1173 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 ZBTB3Q9H5J0 574 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 TBC1D2BQ9UPU7 963 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 N4BP3O15049 544 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 ARHGAP6O43182 974 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 PFKFB1P16118 471 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 CEBPAP49715 358 aaPredicted RBP12.65□□□□□ -0.38
CLN3-244ENST00000636147 TNNI3KQ59H18 835 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 NCOA7Q8NI08 942 aa12.65□□□□□ -0.38
CLN3-244ENST00000636147 CNNM1Q9NRU3 951 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms