RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 MYCP01106 439 aaPredicted RBP18.29■□□□□ 0.52
SNX1-214ENST00000625244 SP3Q02447 781 aa18.29■□□□□ 0.52
SNX1-214ENST00000625244 SLC4A8Q2Y0W8 1093 aa18.29■□□□□ 0.52
SNX1-214ENST00000625244 WNK4Q96J92 1243 aa18.29■□□□□ 0.52
SNX1-214ENST00000625244 CLMNQ96JQ2 1002 aa18.29■□□□□ 0.52
SNX1-214ENST00000625244 TSPYL4Q9UJ04 414 aa18.29■□□□□ 0.52
SNX1-214ENST00000625244 PSME4Q14997 1843 aa18.28■□□□□ 0.52
SNX1-214ENST00000625244 ZBTB48P10074 688 aaPredicted RBP18.28■□□□□ 0.52
SNX1-214ENST00000625244 SLC9C1Q4G0N8 1177 aa18.28■□□□□ 0.52
SNX1-214ENST00000625244 DLG5Q8TDM6 1919 aa18.27■□□□□ 0.52
SNX1-214ENST00000625244 ATP5J2-PTCD1G3V325 749 aa18.27■□□□□ 0.52
SNX1-214ENST00000625244 IRS4O14654 1257 aaPredicted RBP18.27■□□□□ 0.52
SNX1-214ENST00000625244 PODNQ7Z5L7 613 aa18.27■□□□□ 0.52
SNX1-214ENST00000625244 ISCA1Q9BUE6 129 aa18.27■□□□□ 0.52
SNX1-214ENST00000625244 PTCH2Q9Y6C5 1203 aa18.27■□□□□ 0.52
SNX1-214ENST00000625244 VCANP13611 3396 aa18.26■□□□□ 0.51
SNX1-214ENST00000625244 DACT2Q5SW24 774 aa18.26■□□□□ 0.51
SNX1-214ENST00000625244 NBPF11Q86T75 865 aa18.26■□□□□ 0.51
SNX1-214ENST00000625244 OGFOD1Q8N543 542 aa18.26■□□□□ 0.51
SNX1-214ENST00000625244 PTPN18Q99952 460 aa18.26■□□□□ 0.51
SNX1-214ENST00000625244 PRO3102Q9H379 93 aa18.26■□□□□ 0.51
SNX1-214ENST00000625244 WTIPA6NIX2 430 aaPredicted RBP18.25■□□□□ 0.51
SNX1-214ENST00000625244 PPP2R1AP30153 589 aa18.25■□□□□ 0.51
SNX1-214ENST00000625244 NFE2L2Q16236 605 aa18.25■□□□□ 0.51
SNX1-214ENST00000625244 APOBEC3FQ8IUX4 373 aaKnown RBP18.25■□□□□ 0.51
SNX1-214ENST00000625244 GJA5P36382 358 aa18.24■□□□□ 0.51
SNX1-214ENST00000625244 MAP3K11Q16584 847 aa18.24■□□□□ 0.51
SNX1-214ENST00000625244 OTUD7BQ6GQQ9 843 aa18.24■□□□□ 0.51
SNX1-214ENST00000625244 DPF3Q92784 378 aa18.24■□□□□ 0.51
SNX1-214ENST00000625244 PLEKHF1Q96S99 279 aa18.24■□□□□ 0.51
SNX1-214ENST00000625244 NEFMP07197 916 aa18.23■□□□□ 0.51
SNX1-214ENST00000625244 MNX1P50219 401 aaPredicted RBP18.23■□□□□ 0.51
SNX1-214ENST00000625244 PLBD2Q8NHP8 589 aa18.23■□□□□ 0.51
SNX1-214ENST00000625244 FBXW7Q969H0 707 aa18.23■□□□□ 0.51
SNX1-214ENST00000625244 XDHP47989 1333 aa18.23■□□□□ 0.51
SNX1-214ENST00000625244 SSC5DA1L4H1 1573 aa18.22■□□□□ 0.51
SNX1-214ENST00000625244 SH3TC2Q8TF17 1288 aa18.22■□□□□ 0.51
SNX1-214ENST00000625244 DEFB129Q9H1M3 183 aa18.22■□□□□ 0.51
SNX1-214ENST00000625244 ATP2B4P23634 1241 aa18.21■□□□□ 0.51
SNX1-214ENST00000625244 ANKRD13DQ6ZTN6 518 aa18.21■□□□□ 0.51
SNX1-214ENST00000625244 ZBED3Q96IU2 234 aaPredicted RBP18.21■□□□□ 0.51
SNX1-214ENST00000625244 CLSPNQ9HAW4 1339 aa18.21■□□□□ 0.51
SNX1-214ENST00000625244 TESPA1A2RU30 521 aaPredicted RBP18.2■□□□□ 0.5
SNX1-214ENST00000625244 SOX1O00570 391 aaPredicted RBP18.2■□□□□ 0.5
SNX1-214ENST00000625244 STRIP1Q5VSL9 837 aa18.2■□□□□ 0.5
SNX1-214ENST00000625244 SHISA4Q96DD7 197 aa18.2■□□□□ 0.5
SNX1-214ENST00000625244 CCDC85AQ96PX6 553 aaPredicted RBP18.2■□□□□ 0.5
SNX1-214ENST00000625244 CHPF2Q9P2E5 772 aa18.2■□□□□ 0.5
SNX1-214ENST00000625244 MYO3BQ8WXR4 1341 aa18.2■□□□□ 0.5
SNX1-214ENST00000625244 PPP1R12BO60237 982 aaPredicted RBP18.19■□□□□ 0.5
SNX1-214ENST00000625244 KRT24Q2M2I5 525 aa18.19■□□□□ 0.5
SNX1-214ENST00000625244 LAMB1P07942 1786 aa18.19■□□□□ 0.5
SNX1-214ENST00000625244 TRIM28Q13263 835 aaKnown RBP18.18■□□□□ 0.5
SNX1-214ENST00000625244 ARHGEF6Q15052 776 aa18.18■□□□□ 0.5
SNX1-214ENST00000625244 KIAA0825Q8IV33 1275 aa18.18■□□□□ 0.5
SNX1-214ENST00000625244 LRCH3Q96II8 777 aa18.18■□□□□ 0.5
SNX1-214ENST00000625244 COL1A1P02452 1464 aaPredicted RBP18.18■□□□□ 0.5
SNX1-214ENST00000625244 ZNF646O15015 1829 aaPredicted RBP18.18■□□□□ 0.5
SNX1-214ENST00000625244 MED23Q9ULK4 1368 aa18.17■□□□□ 0.5
SNX1-214ENST00000625244 UNCXA6NJT0 531 aa18.17■□□□□ 0.5
SNX1-214ENST00000625244 CCDC152Q4G0S7 254 aa18.17■□□□□ 0.5
SNX1-214ENST00000625244 ZBTB38Q8NAP3 1195 aaPredicted RBP18.17■□□□□ 0.5
SNX1-214ENST00000625244 SPTBN5Q9NRC6 3674 aaKnown RBP18.17■□□□□ 0.5
SNX1-214ENST00000625244 MMP14P50281 582 aa18.16■□□□□ 0.5
SNX1-214ENST00000625244 ANKRD18AQ8IVF6 992 aa18.16■□□□□ 0.5
SNX1-214ENST00000625244 MS4A4AQ96JQ5 239 aa18.16■□□□□ 0.5
SNX1-214ENST00000625244 BABAM1Q9NWV8 329 aa18.16■□□□□ 0.5
SNX1-214ENST00000625244 USP2O75604 605 aaPredicted RBP18.15■□□□□ 0.5
SNX1-214ENST00000625244 MTFR1Q15390 333 aa18.15■□□□□ 0.5
SNX1-214ENST00000625244 NBPF12Q5TAG4 269 aaPredicted RBP18.15■□□□□ 0.5
SNX1-214ENST00000625244 TTLL5Q6EMB2 1281 aa18.15■□□□□ 0.5
SNX1-214ENST00000625244 UBE2Q1Q7Z7E8 422 aa18.15■□□□□ 0.5
SNX1-214ENST00000625244 TXNRD3Q86VQ6 643 aa18.15■□□□□ 0.5
SNX1-214ENST00000625244 ARHGAP39Q9C0H5 1083 aa18.15■□□□□ 0.5
SNX1-214ENST00000625244 TAF1CQ15572 869 aaPredicted RBP18.14■□□□□ 0.49
SNX1-214ENST00000625244 BRI3BPQ8WY22 251 aa18.14■□□□□ 0.49
SNX1-214ENST00000625244 JARID2Q92833 1246 aaPredicted RBP18.14■□□□□ 0.49
SNX1-214ENST00000625244 COA1Q9GZY4 146 aa18.14■□□□□ 0.49
SNX1-214ENST00000625244 ZFYVE28Q9HCC9 887 aa18.14■□□□□ 0.49
SNX1-214ENST00000625244 PCDHAC2Q9Y5I4 1007 aa18.14■□□□□ 0.49
SNX1-214ENST00000625244 ZBTB7BO15156 539 aaPredicted RBP18.13■□□□□ 0.49
SNX1-214ENST00000625244 IREB2P48200 963 aaKnown RBP18.13■□□□□ 0.49
SNX1-214ENST00000625244 SUPT20HL1Q3ZLR7 823 aa18.13■□□□□ 0.49
SNX1-214ENST00000625244 OPTNQ96CV9 577 aa18.13■□□□□ 0.49
SNX1-214ENST00000625244 ELP3Q9H9T3 547 aa18.13■□□□□ 0.49
SNX1-214ENST00000625244 PPP2R3BQ9Y5P8 575 aa18.13■□□□□ 0.49
SNX1-214ENST00000625244 A0A1W2PPC1 479 aa18.12■□□□□ 0.49
SNX1-214ENST00000625244 PDE8AO60658 829 aa18.12■□□□□ 0.49
SNX1-214ENST00000625244 DLGAP5Q15398 846 aa18.12■□□□□ 0.49
SNX1-214ENST00000625244 ANKRD13AQ8IZ07 590 aa18.12■□□□□ 0.49
SNX1-214ENST00000625244 CNKSR2Q8WXI2 1034 aa18.12■□□□□ 0.49
SNX1-214ENST00000625244 MINPP1Q9UNW1 487 aa18.12■□□□□ 0.49
SNX1-214ENST00000625244 MAPK8IP3Q9UPT6 1336 aa18.12■□□□□ 0.49
SNX1-214ENST00000625244 LAMA2P24043 3122 aaKnown RBP18.12■□□□□ 0.49
SNX1-214ENST00000625244 HSP90B1P14625 803 aaKnown RBP18.11■□□□□ 0.49
SNX1-214ENST00000625244 CCT4P50991 539 aaKnown RBP18.11■□□□□ 0.49
SNX1-214ENST00000625244 HDGFL1Q5TGJ6 251 aa18.11■□□□□ 0.49
SNX1-214ENST00000625244 FAM43AQ8N2R8 423 aa18.11■□□□□ 0.49
SNX1-214ENST00000625244 HTATIP2Q9BUP3 242 aa18.11■□□□□ 0.49
SNX1-214ENST00000625244 NR2E3Q9Y5X4 410 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms