RNA–Protein interactions for RNA: ENST00000624720.1

USB1-216, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

Gene USB1, Length 2,895 nt, Biotype TEC, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-216ENST00000624720 PNPLA6Q8IY17 1366 aa10.68□□□□□ -0.7
USB1-216ENST00000624720 ZSCAN9O15535 394 aaPredicted RBP10.68□□□□□ -0.7
USB1-216ENST00000624720 PRPF4BQ13523 1007 aaKnown RBP10.68□□□□□ -0.7
USB1-216ENST00000624720 PDIA5Q14554 519 aa10.68□□□□□ -0.7
USB1-216ENST00000624720 STAG1Q8WVM7 1258 aa10.68□□□□□ -0.7
USB1-216ENST00000624720 RETREG1Q9H6L5 497 aa10.68□□□□□ -0.7
USB1-216ENST00000624720 NLRP2Q9NX02 1062 aa10.68□□□□□ -0.7
USB1-216ENST00000624720 THRAP3Q9Y2W1 955 aaKnown RBP10.68□□□□□ -0.7
USB1-216ENST00000624720 TIMM44O43615 452 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 STAG2Q8N3U4 1231 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 CCDC85AQ96PX6 553 aaPredicted RBP10.67□□□□□ -0.7
USB1-216ENST00000624720 POLR3CQ9BUI4 534 aaPredicted RBP10.67□□□□□ -0.7
USB1-216ENST00000624720 LRRC7Q96NW7 1537 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 CREB3O43889 395 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 NBPF7P0C2Y1 421 aaPredicted RBP10.67□□□□□ -0.7
USB1-216ENST00000624720 VCAM1P19320 739 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 ELF1P32519 619 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 ZNF394Q53GI3 561 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 UHMK1Q8TAS1 419 aaKnown RBP10.67□□□□□ -0.7
USB1-216ENST00000624720 FAM163AQ96GL9 167 aaPredicted RBP10.67□□□□□ -0.7
USB1-216ENST00000624720 TBC1D2Q9BYX2 928 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 GNL3LQ9NVN8 582 aaKnown RBP10.67□□□□□ -0.7
USB1-216ENST00000624720 ITM2BQ9Y287 266 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 USP19O94966 1318 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 TTC21AQ8NDW8 1320 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 ZNF24P17028 368 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 LMNB1P20700 586 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 PRPHP41219 470 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 IRF5Q13568 498 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 DBN1Q16643 649 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 MPRIPQ6WCQ1 1025 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 FBXO18Q8NFZ0 1043 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 NEK9Q8TD19 979 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 SPATA32Q96LK8 384 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 GBP4Q96PP9 640 aa10.67□□□□□ -0.7
USB1-216ENST00000624720 MAP2P11137 1827 aaKnown RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 OVOS2A0A0J9YW53 1432 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 OVOS2Q6IE36 1432 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 A0A0G2JS52 829 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 PECAM1P16284 738 aaPredicted RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 GCFC2P16383 781 aaKnown RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 RBM6P78332 1123 aaKnown RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 SNX1Q13596 522 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 SAPCD2Q86UD0 394 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 NUTM1Q86Y26 1132 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 GOLGA5Q8TBA6 731 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 BAG1Q99933 345 aaPredicted RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 IRX2Q9BZI1 471 aaPredicted RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 SPTLC3Q9NUV7 552 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 RABL2AQ9UBK7 228 aaPredicted RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 TRIM27P14373 513 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 USP8P40818 1118 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 EIF5P55010 431 aaKnown RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 NUCB2P80303 420 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 TWISTNBQ3B726 338 aaPredicted RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 GBP6Q6ZN66 633 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 AGBL1Q96MI9 1066 aa10.66□□□□□ -0.7
USB1-216ENST00000624720 DUSP9Q99956 384 aaKnown RBP10.66□□□□□ -0.7
USB1-216ENST00000624720 ADGRL3Q9HAR2 1447 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 EME2A4GXA9 379 aaPredicted RBP10.65□□□□□ -0.7
USB1-216ENST00000624720 MYSM1Q5VVJ2 828 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 SAMD3Q8N6K7 520 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 SPRYD3Q8NCJ5 442 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 ZNF397Q8NF99 534 aaPredicted RBP10.65□□□□□ -0.7
USB1-216ENST00000624720 STRN4Q9NRL3 753 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 TSPYL4Q9UJ04 414 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 USP32Q8NFA0 1604 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 FLT4P35916 1363 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 PYGBP11216 843 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 TRIML1Q8N9V2 468 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 TBC1D5Q92609 795 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 TRIM7Q9C029 511 aa10.65□□□□□ -0.7
USB1-216ENST00000624720 ANKRD62A6NC57 917 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 EIF3CLB5ME19 914 aaKnown RBP10.64□□□□□ -0.71
USB1-216ENST00000624720 SASH1O94885 1247 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 CPP00450 1065 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 EIF2S2P20042 333 aaKnown RBP10.64□□□□□ -0.71
USB1-216ENST00000624720 GJA8P48165 433 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 PIP4K2BP78356 416 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 ACBD5Q5T8D3 534 aaPredicted RBP10.64□□□□□ -0.71
USB1-216ENST00000624720 SLC4A10Q6U841 1118 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 EIF3CQ99613 913 aaKnown RBP10.64□□□□□ -0.71
USB1-216ENST00000624720 NACA2Q9H009 215 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 LGR6Q9HBX8 967 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 ANXA1P04083 346 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 SESN3P58005 492 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 ZNF445P59923 1031 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 NEDD9Q14511 834 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 CRYMQ14894 314 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 TMEM57Q8N5G2 664 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 ANKRD24Q8TF21 1146 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 METTL14Q9HCE5 456 aaKnown RBP10.64□□□□□ -0.71
USB1-216ENST00000624720 STRCP1A6NGW2 1772 aa10.64□□□□□ -0.71
USB1-216ENST00000624720 SFMBT2Q5VUG0 894 aa10.63□□□□□ -0.71
USB1-216ENST00000624720 SYNE3Q6ZMZ3 975 aa10.63□□□□□ -0.71
USB1-216ENST00000624720 ANKRD18AQ8IVF6 992 aa10.63□□□□□ -0.71
USB1-216ENST00000624720 SPC24Q8NBT2 197 aa10.63□□□□□ -0.71
USB1-216ENST00000624720 MORC4Q8TE76 937 aa10.63□□□□□ -0.71
USB1-216ENST00000624720 RSPH1Q8WYR4 309 aa10.63□□□□□ -0.71
USB1-216ENST00000624720 PCDHB15Q9Y5E8 787 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms