RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 ANO10Q9NW15 660 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 PTPDC1A2A3K4 754 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 TULP2O00295 520 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 RFX5P48382 616 aaPredicted RBP10.16□□□□□ -0.78
VCL-207ENST00000624354 FOSBP53539 338 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 CEP135Q66GS9 1140 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 DDX46Q7L014 1031 aaKnown RBP10.16□□□□□ -0.78
VCL-207ENST00000624354 ZNF592Q92610 1267 aa10.16□□□□□ -0.78
VCL-207ENST00000624354 CAPN2P17655 700 aa10.15□□□□□ -0.78
VCL-207ENST00000624354 ADD1P35611 737 aaKnown RBP10.15□□□□□ -0.78
VCL-207ENST00000624354 KBTBD3Q8NAB2 608 aa10.15□□□□□ -0.78
VCL-207ENST00000624354 CHGBP05060 677 aa10.15□□□□□ -0.78
VCL-207ENST00000624354 NAA30Q147X3 362 aaPredicted RBP10.15□□□□□ -0.78
VCL-207ENST00000624354 UBE3BQ7Z3V4 1068 aa10.15□□□□□ -0.78
VCL-207ENST00000624354 CHMP4CQ96CF2 233 aa10.15□□□□□ -0.78
VCL-207ENST00000624354 USP28Q96RU2 1077 aa10.15□□□□□ -0.78
VCL-207ENST00000624354 SLC52A2Q9HAB3 445 aa10.15□□□□□ -0.78
VCL-207ENST00000624354 SKILP12757 684 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 ME1P48163 572 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 FAM193AP78312 1265 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 RBM6P78332 1123 aaKnown RBP10.15□□□□□ -0.79
VCL-207ENST00000624354 FAM160A1Q05DH4 1040 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 APOBRQ0VD83 1088 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 PTPN14Q15678 1187 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 RABL6Q3YEC7 729 aaPredicted RBP10.15□□□□□ -0.79
VCL-207ENST00000624354 STOX1Q6ZVD7 989 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 FILIP1Q7Z7B0 1213 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 CEP57L1Q8IYX8 460 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 RAPGEF4Q8WZA2 1011 aa10.15□□□□□ -0.79
VCL-207ENST00000624354 SH3TC1Q8TE82 1336 aa10.14□□□□□ -0.79
VCL-207ENST00000624354 ZNF397Q8NF99 534 aaPredicted RBP10.14□□□□□ -0.79
VCL-207ENST00000624354 FTOQ9C0B1 505 aaKnown RBP eCLIP10.14□□□□□ -0.79
VCL-207ENST00000624354 NAT10Q9H0A0 1025 aaKnown RBP10.14□□□□□ -0.79
VCL-207ENST00000624354 GOLPH3LQ9H4A5 285 aa10.14□□□□□ -0.79
VCL-207ENST00000624354 CCT2P78371 535 aaKnown RBP10.14□□□□□ -0.79
VCL-207ENST00000624354 SNW1Q13573 536 aaKnown RBP10.14□□□□□ -0.79
VCL-207ENST00000624354 KRT28Q7Z3Y7 464 aa10.14□□□□□ -0.79
VCL-207ENST00000624354 FSIP1Q8NA03 581 aa10.14□□□□□ -0.79
VCL-207ENST00000624354 DSCC1Q9BVC3 393 aa10.14□□□□□ -0.79
VCL-207ENST00000624354 A0A087WZG4 1122 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 NUTM2BA6NNL0 878 aaPredicted RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 NUTM2EB1AL46 878 aaPredicted RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 CTDNEP1O95476 244 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 CREBRFQ8IUR6 639 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 NUTM2AQ8IVF1 878 aaPredicted RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 NFATC2IPQ8NCF5 419 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 TRERF1Q96PN7 1200 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 HELLSQ9NRZ9 838 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 AXIN2Q9Y2T1 843 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 CCDC9Q9Y3X0 531 aaKnown RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 USP16Q9Y5T5 823 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 CCDC69A6NI79 296 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 ARID5BQ14865 1188 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 ZRSR1Q15695 479 aaKnown RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 TTC5Q8N0Z6 440 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 ENGASEQ8NFI3 743 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 ZNF496Q96IT1 587 aaPredicted RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 RGPD2P0DJD1 1756 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 PHRF1Q9P1Y6 1649 aaKnown RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 GOLIM4O00461 696 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 SNRPA1P09661 255 aaKnown RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 EXOSC10Q01780 885 aaKnown RBP10.13□□□□□ -0.79
VCL-207ENST00000624354 NEUROD6Q96NK8 337 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 SDF4Q9BRK5 362 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 AGXT2Q9BYV1 514 aa10.13□□□□□ -0.79
VCL-207ENST00000624354 GUCY1B3Q02153 619 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 DHX40Q8IX18 779 aaKnown RBP10.12□□□□□ -0.79
VCL-207ENST00000624354 AOPEPQ8N6M6 819 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 C19orf44Q9H6X5 657 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 PAG1Q9NWQ8 432 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 ATP5J2-PTCD1G3V325 749 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 PTCD1O75127 700 aaKnown RBP10.12□□□□□ -0.79
VCL-207ENST00000624354 GSDMDP57764 484 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 LMBR1LQ6UX01 489 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 CERS3Q8IU89 383 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 MRPS27Q92552 414 aaKnown RBP10.12□□□□□ -0.79
VCL-207ENST00000624354 ZNF274Q96GC6 653 aaPredicted RBP10.12□□□□□ -0.79
VCL-207ENST00000624354 NCOA5Q9HCD5 579 aaKnown RBP10.12□□□□□ -0.79
VCL-207ENST00000624354 PALLDQ8WX93 1383 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 USP27XA6NNY8 438 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 E7EWF7 191 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 PIP4K2AP48426 406 aaPredicted RBP10.12□□□□□ -0.79
VCL-207ENST00000624354 NYAP1Q6ZVC0 841 aa10.12□□□□□ -0.79
VCL-207ENST00000624354 LMTK3Q96Q04 1460 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 A0A087WWV3 80 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 TATP17735 454 aaPredicted RBP10.11□□□□□ -0.79
VCL-207ENST00000624354 PDIA3P30101 505 aaKnown RBP10.11□□□□□ -0.79
VCL-207ENST00000624354 SF3A1Q15459 793 aaKnown RBP10.11□□□□□ -0.79
VCL-207ENST00000624354 KMT5BQ4FZB7 885 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 TICAM2Q86XR7 235 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 TRMT1Q9NXH9 659 aaKnown RBP10.11□□□□□ -0.79
VCL-207ENST00000624354 ERBB3P21860 1342 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 SALL1Q9NSC2 1324 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 KIF2AO00139 706 aaPredicted RBP10.11□□□□□ -0.79
VCL-207ENST00000624354 PPFIA3O75145 1194 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 HSPD1P10809 573 aaKnown RBP10.11□□□□□ -0.79
VCL-207ENST00000624354 PHKG2P15735 406 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 TNNT3P45378 269 aaPredicted RBP10.11□□□□□ -0.79
VCL-207ENST00000624354 CCZ1BP86790 482 aa10.11□□□□□ -0.79
VCL-207ENST00000624354 CCZ1P86791 482 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms