RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 ADORA1P30542 326 aa14.28□□□□□ -0.12
PDPN-211ENST00000617617 NEUROD6Q96NK8 337 aa14.28□□□□□ -0.12
PDPN-211ENST00000617617 PDGFDQ9GZP0 370 aaPredicted RBP14.28□□□□□ -0.12
PDPN-211ENST00000617617 ATP6V0A2Q9Y487 856 aa14.28□□□□□ -0.12
PDPN-211ENST00000617617 CHMLP26374 656 aa14.28□□□□□ -0.12
PDPN-211ENST00000617617 GRIPAP1Q4V328 841 aa14.28□□□□□ -0.12
PDPN-211ENST00000617617 TMED8Q6PL24 325 aaPredicted RBP14.28□□□□□ -0.12
PDPN-211ENST00000617617 FER1L6Q2WGJ9 1857 aa14.27□□□□□ -0.12
PDPN-211ENST00000617617 ATP2B4P23634 1241 aa14.27□□□□□ -0.12
PDPN-211ENST00000617617 CCDC102BQ68D86 513 aa14.27□□□□□ -0.12
PDPN-211ENST00000617617 FBXO33Q7Z6M2 555 aa14.27□□□□□ -0.12
PDPN-211ENST00000617617 RAD50Q92878 1312 aa14.27□□□□□ -0.12
PDPN-211ENST00000617617 H0YIN7 160 aa14.27□□□□□ -0.13
PDPN-211ENST00000617617 PPEF1O14829 653 aaPredicted RBP14.27□□□□□ -0.13
PDPN-211ENST00000617617 TTC39AQ5SRH9 613 aa14.27□□□□□ -0.13
PDPN-211ENST00000617617 MED23Q9ULK4 1368 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 C2CD5Q86YS7 1000 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 CNKSR1Q969H4 720 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 TAF5LO75529 589 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 TGFB2P61812 414 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 CC2D2BQ6DHV5 1058 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 KBTBD3Q8NAB2 608 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 BOLA2Q9H3K6 86 aa14.26□□□□□ -0.13
PDPN-211ENST00000617617 TRIM6-TRIM34B2RNG4 842 aa14.25□□□□□ -0.13
PDPN-211ENST00000617617 TTF1Q15361 905 aaPredicted RBP14.25□□□□□ -0.13
PDPN-211ENST00000617617 PAG1Q9NWQ8 432 aa14.25□□□□□ -0.13
PDPN-211ENST00000617617 HELBQ8NG08 1087 aaPredicted RBP14.25□□□□□ -0.13
PDPN-211ENST00000617617 ESYT1Q9BSJ8 1104 aa14.25□□□□□ -0.13
PDPN-211ENST00000617617 POLD1P28340 1107 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 GORABQ5T7V8 394 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 C7orf43Q8WVR3 580 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 IL17RAQ96F46 866 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 CHD4Q14839 1912 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 LAMA4Q16363 1823 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 MCAMP43121 646 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 PHKA1P46020 1223 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 GPSM2P81274 684 aa14.24□□□□□ -0.13
PDPN-211ENST00000617617 LRRFIP1Q32MZ4 808 aaKnown RBP14.24□□□□□ -0.13
PDPN-211ENST00000617617 RTFDC1Q9BY42 306 aaPredicted RBP14.24□□□□□ -0.13
PDPN-211ENST00000617617 GNL3LQ9NVN8 582 aaKnown RBP14.24□□□□□ -0.13
PDPN-211ENST00000617617 RUFY2Q8WXA3 655 aa14.23□□□□□ -0.13
PDPN-211ENST00000617617 RILPL2Q969X0 211 aa14.23□□□□□ -0.13
PDPN-211ENST00000617617 FAM84BQ96KN1 310 aaPredicted RBP14.23□□□□□ -0.13
PDPN-211ENST00000617617 COL1A1P02452 1464 aaPredicted RBP14.23□□□□□ -0.13
PDPN-211ENST00000617617 SEC24BO95487 1268 aa14.23□□□□□ -0.13
PDPN-211ENST00000617617 ZFYP08048 801 aaPredicted RBP14.23□□□□□ -0.13
PDPN-211ENST00000617617 RBM25P49756 843 aaKnown RBP14.23□□□□□ -0.13
PDPN-211ENST00000617617 CAVIN4Q5BKX8 364 aa14.23□□□□□ -0.13
PDPN-211ENST00000617617 CD2APQ9Y5K6 639 aa14.23□□□□□ -0.13
PDPN-211ENST00000617617 SALL1Q9NSC2 1324 aa14.23□□□□□ -0.13
PDPN-211ENST00000617617 REC8O95072 547 aa14.23□□□□□ -0.13
PDPN-211ENST00000617617 SGSM2O43147 1006 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 PTGER2P43116 358 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 R3HDM1Q15032 1099 aaKnown RBP14.22□□□□□ -0.13
PDPN-211ENST00000617617 SPATA5Q8NB90 893 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 TBC1D32Q96NH3 1257 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 GGA1Q9UJY5 639 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 DENND2AQ9ULE3 1009 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 KCNA3P22001 575 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 SCARF1Q14162 830 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 IL27Q8NEV9 243 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 UPF2Q9HAU5 1272 aaKnown RBP14.22□□□□□ -0.13
PDPN-211ENST00000617617 HMG20BQ9P0W2 317 aa14.22□□□□□ -0.13
PDPN-211ENST00000617617 RASGRF1Q13972 1273 aa14.21□□□□□ -0.13
PDPN-211ENST00000617617 TBC1D16Q8TBP0 767 aa14.21□□□□□ -0.13
PDPN-211ENST00000617617 IL1R1P14778 569 aa14.21□□□□□ -0.14
PDPN-211ENST00000617617 KCNJ4P48050 445 aa14.21□□□□□ -0.14
PDPN-211ENST00000617617 HELLSQ9NRZ9 838 aa14.21□□□□□ -0.14
PDPN-211ENST00000617617 FOCADQ5VW36 1801 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 HIBADHP31937 336 aaKnown RBP14.2□□□□□ -0.14
PDPN-211ENST00000617617 BCAMP50895 628 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 ZSCAN25Q6NSZ9 544 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 PRPF40BQ6NWY9 871 aaKnown RBP14.2□□□□□ -0.14
PDPN-211ENST00000617617 FSD1Q9BTV5 496 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 VPS33BQ9H267 617 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 ANKIB1Q9P2G1 1089 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 RBM19Q9Y4C8 960 aaKnown RBP14.2□□□□□ -0.14
PDPN-211ENST00000617617 MAP4K4O95819 1239 aaPredicted RBP14.2□□□□□ -0.14
PDPN-211ENST00000617617 CYP2E1P05181 493 aaPredicted RBP14.2□□□□□ -0.14
PDPN-211ENST00000617617 ZAP70P43403 619 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 TDRD7Q8NHU6 1098 aaKnown RBP14.2□□□□□ -0.14
PDPN-211ENST00000617617 USP26Q9BXU7 913 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 DIAPH3Q9NSV4 1193 aa14.2□□□□□ -0.14
PDPN-211ENST00000617617 GOLIM4O00461 696 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 ZMYM1Q5SVZ6 1142 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 ZNF804AQ7Z570 1209 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 CDK5RAP2Q96SN8 1893 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 DICER1Q9UPY3 1922 aaKnown RBP14.19□□□□□ -0.14
PDPN-211ENST00000617617 RNF113AO15541 343 aaKnown RBP14.19□□□□□ -0.14
PDPN-211ENST00000617617 ZBTB7AO95365 584 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 SOGA3Q5TF21 947 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 ILDR2Q71H61 639 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 DNAJC2Q99543 621 aaKnown RBP14.19□□□□□ -0.14
PDPN-211ENST00000617617 POLLQ9UGP5 575 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 SNAP23O00161 211 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 UBE3CQ15386 1083 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 MPNDQ8N594 471 aa14.19□□□□□ -0.14
PDPN-211ENST00000617617 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.19□□□□□ -0.14
PDPN-211ENST00000617617 UFL1O94874 794 aa14.18□□□□□ -0.14
PDPN-211ENST00000617617 GYG1P46976 350 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms