RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ANKRD2Q9GZV1 360 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 COPRSQ9NQ92 184 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 EGFRP00533 1210 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 KCNJ4P48050 445 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 ATP8B2P98198 1209 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 DDX19BQ9UMR2 479 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 SCN4AP35499 1836 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 ADAMTSL1Q8N6G6 1762 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 ZC3H4Q9UPT8 1303 aaKnown RBP16.81■□□□□ 0.28
LINC00540-202ENST00000616974 PDE8BO95263 885 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 EPS15P42566 896 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 LEMD3Q9Y2U8 911 aa16.81■□□□□ 0.28
LINC00540-202ENST00000616974 SASH1O94885 1247 aa16.8■□□□□ 0.28
LINC00540-202ENST00000616974 TFCP2Q12800 502 aa16.8■□□□□ 0.28
LINC00540-202ENST00000616974 SSH3Q8TE77 659 aa16.8■□□□□ 0.28
LINC00540-202ENST00000616974 EYA3Q99504 573 aa16.8■□□□□ 0.28
LINC00540-202ENST00000616974 MROH5Q6ZUA9 1318 aa16.8■□□□□ 0.28
LINC00540-202ENST00000616974 FGFR2P21802 821 aa16.79■□□□□ 0.28
LINC00540-202ENST00000616974 ADORA1P30542 326 aa16.79■□□□□ 0.28
LINC00540-202ENST00000616974 GMPSP49915 693 aaPredicted RBP16.79■□□□□ 0.28
LINC00540-202ENST00000616974 EIF6P56537 245 aaKnown RBP16.79■□□□□ 0.28
LINC00540-202ENST00000616974 FAM84BQ96KN1 310 aaPredicted RBP16.79■□□□□ 0.28
LINC00540-202ENST00000616974 EXOC6BQ9Y2D4 811 aa16.79■□□□□ 0.28
LINC00540-202ENST00000616974 BCAMP50895 628 aa16.79■□□□□ 0.28
LINC00540-202ENST00000616974 DPY19L2Q6NUT2 758 aa16.79■□□□□ 0.28
LINC00540-202ENST00000616974 GPC2Q8N158 579 aa16.79■□□□□ 0.28
LINC00540-202ENST00000616974 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.79■□□□□ 0.28
LINC00540-202ENST00000616974 ARAP2Q8WZ64 1704 aa16.79■□□□□ 0.28
LINC00540-202ENST00000616974 MYO5AQ9Y4I1 1855 aaKnown RBP16.79■□□□□ 0.28
LINC00540-202ENST00000616974 KDM2BQ8NHM5 1336 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 TIMM10P62072 90 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 CIAPIN1Q6FI81 312 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 COL1A1P02452 1464 aaPredicted RBP16.78■□□□□ 0.28
LINC00540-202ENST00000616974 FBXW7Q969H0 707 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 BCL11AQ9H165 835 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 VPS33BQ9H267 617 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 CD209Q9NNX6 404 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 PCDHB15Q9Y5E8 787 aa16.78■□□□□ 0.28
LINC00540-202ENST00000616974 APBB1O00213 710 aa16.77■□□□□ 0.28
LINC00540-202ENST00000616974 L3MBTL3Q96JM7 780 aaPredicted RBP16.77■□□□□ 0.28
LINC00540-202ENST00000616974 SURF6O75683 361 aaKnown RBP16.76■□□□□ 0.27
LINC00540-202ENST00000616974 CIAO1O76071 339 aa16.76■□□□□ 0.27
LINC00540-202ENST00000616974 MS4A1P11836 297 aa16.76■□□□□ 0.27
LINC00540-202ENST00000616974 UBE4AQ14139 1066 aa16.76■□□□□ 0.27
LINC00540-202ENST00000616974 GRIK5Q16478 980 aa16.76■□□□□ 0.27
LINC00540-202ENST00000616974 CERS5Q8N5B7 392 aa16.76■□□□□ 0.27
LINC00540-202ENST00000616974 G3V3G9 751 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 IL15P40933 162 aaPredicted RBP16.75■□□□□ 0.27
LINC00540-202ENST00000616974 GTF2IP78347 998 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 DCAF8Q5TAQ9 597 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 EXOC6Q8TAG9 804 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 TRPM4Q8TD43 1214 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 PCDHAC2Q9Y5I4 1007 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 PUM3Q15397 648 aaKnown RBP16.75■□□□□ 0.27
LINC00540-202ENST00000616974 DLK2Q6UY11 383 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 SAMD7Q7Z3H4 446 aa16.75■□□□□ 0.27
LINC00540-202ENST00000616974 TAF1DQ9H5J8 278 aaPredicted RBP16.75■□□□□ 0.27
LINC00540-202ENST00000616974 TLR7Q9NYK1 1049 aaKnown RBP16.75■□□□□ 0.27
LINC00540-202ENST00000616974 SCAF8Q9UPN6 1271 aaKnown RBP16.75■□□□□ 0.27
LINC00540-202ENST00000616974 ASTN2O75129 1339 aaPredicted RBP16.74■□□□□ 0.27
LINC00540-202ENST00000616974 VIL1P09327 827 aaKnown RBP16.74■□□□□ 0.27
LINC00540-202ENST00000616974 VEGFAP15692 232 aaPredicted RBP16.74■□□□□ 0.27
LINC00540-202ENST00000616974 PHKA1P46020 1223 aa16.74■□□□□ 0.27
LINC00540-202ENST00000616974 HIRAP54198 1017 aaPredicted RBP16.74■□□□□ 0.27
LINC00540-202ENST00000616974 ATP2B3Q16720 1220 aa16.74■□□□□ 0.27
LINC00540-202ENST00000616974 DACT2Q5SW24 774 aa16.74■□□□□ 0.27
LINC00540-202ENST00000616974 COA1Q9GZY4 146 aa16.74■□□□□ 0.27
LINC00540-202ENST00000616974 GPRC5DQ9NZD1 345 aa16.74■□□□□ 0.27
LINC00540-202ENST00000616974 CEP126Q9P2H0 1117 aa16.74■□□□□ 0.27
LINC00540-202ENST00000616974 AKAP11Q9UKA4 1901 aa16.74■□□□□ 0.27
LINC00540-202ENST00000616974 FMR1Q06787 632 aaKnown RBP eCLIP16.73■□□□□ 0.27
LINC00540-202ENST00000616974 EAPPQ56P03 285 aaPredicted RBP16.73■□□□□ 0.27
LINC00540-202ENST00000616974 C15orf52Q6ZUT6 534 aaKnown RBP16.73■□□□□ 0.27
LINC00540-202ENST00000616974 PODNQ7Z5L7 613 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 FBXO33Q7Z6M2 555 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 HDAC5Q9UQL6 1122 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 A0A1B0GUL7 405 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 ZNF609O15014 1411 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 IL1R1P14778 569 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 EPHX2P34913 555 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 TTLL5Q6EMB2 1281 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 MICALL2Q8IY33 904 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 GMLQ99445 158 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 AOX1Q06278 1338 aa16.73■□□□□ 0.27
LINC00540-202ENST00000616974 USP17L3A6NCW0 530 aa16.72■□□□□ 0.27
LINC00540-202ENST00000616974 USP17L4A6NCW7 530 aa16.72■□□□□ 0.27
LINC00540-202ENST00000616974 HIBADHP31937 336 aaKnown RBP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 PI16Q6UXB8 463 aa16.72■□□□□ 0.27
LINC00540-202ENST00000616974 USP17L1Q7RTZ2 530 aa16.72■□□□□ 0.27
LINC00540-202ENST00000616974 IL1RAPL2Q9NP60 686 aa16.72■□□□□ 0.27
LINC00540-202ENST00000616974 CNOT7Q9UIV1 285 aaKnown RBP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 HACL1Q9UJ83 578 aa16.72■□□□□ 0.27
LINC00540-202ENST00000616974 G3BP1Q13283 466 aaKnown RBP eCLIP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 TBC1D10BQ4KMP7 808 aaPredicted RBP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 RBM26Q5T8P6 1007 aaKnown RBP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 RSBN1LQ6PCB5 846 aaPredicted RBP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 TDRD7Q8NHU6 1098 aaKnown RBP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 LPIN2Q92539 896 aa16.72■□□□□ 0.27
LINC00540-202ENST00000616974 NOP58Q9Y2X3 529 aaKnown RBP16.72■□□□□ 0.27
LINC00540-202ENST00000616974 F8W031 263 aaPredicted RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms