RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ANTXR1Q9H6X2 564 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 ZNF804BA4D1E1 1349 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 BBOX1O75936 387 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 PDE6BP35913 854 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 DOCK2Q92608 1830 aa17.3■□□□□ 0.36
USP39-220ENST00000613444 ZAP70P43403 619 aa17.29■□□□□ 0.36
USP39-220ENST00000613444 BCAMP50895 628 aa17.29■□□□□ 0.36
USP39-220ENST00000613444 CWC27Q6UX04 472 aaKnown RBP17.29■□□□□ 0.36
USP39-220ENST00000613444 SNRKQ9NRH2 765 aa17.29■□□□□ 0.36
USP39-220ENST00000613444 REC8O95072 547 aa17.29■□□□□ 0.36
USP39-220ENST00000613444 UQCRFS1P1P0C7P4 283 aa17.29■□□□□ 0.36
USP39-220ENST00000613444 NPR1P16066 1061 aa17.29■□□□□ 0.36
USP39-220ENST00000613444 DIAPH3Q9NSV4 1193 aa17.29■□□□□ 0.36
USP39-220ENST00000613444 MYH13Q9UKX3 1938 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 HIP1O00291 1037 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 CHGBP05060 677 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 KLRK1P26718 216 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 FKBP4Q02790 459 aaKnown RBP eCLIP17.28■□□□□ 0.36
USP39-220ENST00000613444 TICAM2Q86XR7 235 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 FAM227BQ96M60 508 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 KIF13BQ9NQT8 1826 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 NMIQ13287 307 aaPredicted RBP17.28■□□□□ 0.36
USP39-220ENST00000613444 RASGRF1Q13972 1273 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 HMG20BQ9P0W2 317 aa17.28■□□□□ 0.36
USP39-220ENST00000613444 A0A0D9SFI3 127 aa17.27■□□□□ 0.36
USP39-220ENST00000613444 CYP2E1P05181 493 aaPredicted RBP17.27■□□□□ 0.36
USP39-220ENST00000613444 ANP32AP39687 249 aaKnown RBP17.27■□□□□ 0.36
USP39-220ENST00000613444 GYG1P46976 350 aa17.27■□□□□ 0.36
USP39-220ENST00000613444 FAM84BQ96KN1 310 aaPredicted RBP17.27■□□□□ 0.36
USP39-220ENST00000613444 DLEC1Q9Y238 1755 aa17.27■□□□□ 0.35
USP39-220ENST00000613444 C10orf71Q711Q0 1435 aa17.27■□□□□ 0.35
USP39-220ENST00000613444 FBXO33Q7Z6M2 555 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 MASTLQ96GX5 879 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 KIF2CQ99661 725 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 SLX4Q8IY92 1834 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 XDHP47989 1333 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 MED23Q9ULK4 1368 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 GPSM2P81274 684 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 LEMD3Q9Y2U8 911 aa17.26■□□□□ 0.35
USP39-220ENST00000613444 COL1A1P02452 1464 aaPredicted RBP17.25■□□□□ 0.35
USP39-220ENST00000613444 TMC4Q7Z404 712 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 TXNRD3Q86VQ6 643 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 SPATA5Q8NB90 893 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 RUFY2Q8WXA3 655 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 LSG1Q9H089 658 aaKnown RBP17.25■□□□□ 0.35
USP39-220ENST00000613444 PPEF1O14829 653 aaPredicted RBP17.25■□□□□ 0.35
USP39-220ENST00000613444 C2CD5Q86YS7 1000 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 SP8Q8IXZ3 490 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 PODXL2Q9NZ53 605 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 ANKIB1Q9P2G1 1089 aa17.25■□□□□ 0.35
USP39-220ENST00000613444 RAD50Q92878 1312 aa17.24■□□□□ 0.35
USP39-220ENST00000613444 EPB41L2O43491 1005 aaKnown RBP17.24■□□□□ 0.35
USP39-220ENST00000613444 ALDH1B1P30837 517 aa17.24■□□□□ 0.35
USP39-220ENST00000613444 KCNJ4P48050 445 aa17.24■□□□□ 0.35
USP39-220ENST00000613444 SLFNL1Q499Z3 407 aa17.24■□□□□ 0.35
USP39-220ENST00000613444 ANO2Q9NQ90 1003 aa17.24■□□□□ 0.35
USP39-220ENST00000613444 PIH1D3Q9NQM4 214 aaKnown RBP17.24■□□□□ 0.35
USP39-220ENST00000613444 ATP6V0A2Q9Y487 856 aa17.24■□□□□ 0.35
USP39-220ENST00000613444 DUOX1Q9NRD9 1551 aa17.24■□□□□ 0.35
USP39-220ENST00000613444 ZBTB22O15209 634 aa17.23■□□□□ 0.35
USP39-220ENST00000613444 STYK1Q6J9G0 422 aa17.23■□□□□ 0.35
USP39-220ENST00000613444 C15orf52Q6ZUT6 534 aaKnown RBP17.23■□□□□ 0.35
USP39-220ENST00000613444 CAVIN4Q5BKX8 364 aa17.23■□□□□ 0.35
USP39-220ENST00000613444 ZNF589Q86UQ0 364 aaPredicted RBP17.23■□□□□ 0.35
USP39-220ENST00000613444 GOLGB1Q14789 3259 aaKnown RBP17.22■□□□□ 0.35
USP39-220ENST00000613444 H0YIN7 160 aa17.22■□□□□ 0.35
USP39-220ENST00000613444 CHRNA5P30532 468 aa17.22■□□□□ 0.35
USP39-220ENST00000613444 ZMYM1Q5SVZ6 1142 aa17.22■□□□□ 0.35
USP39-220ENST00000613444 SEC62Q99442 399 aaKnown RBP17.22■□□□□ 0.35
USP39-220ENST00000613444 NSFL1CQ9UNZ2 370 aaKnown RBP17.22■□□□□ 0.35
USP39-220ENST00000613444 KIAA1551Q9HCM1 1747 aa17.22■□□□□ 0.35
USP39-220ENST00000613444 RNF113AO15541 343 aaKnown RBP17.22■□□□□ 0.35
USP39-220ENST00000613444 ZBTB7AO95365 584 aa17.22■□□□□ 0.35
USP39-220ENST00000613444 R3HDM1Q15032 1099 aaKnown RBP17.22■□□□□ 0.35
USP39-220ENST00000613444 TTF1Q15361 905 aaPredicted RBP17.22■□□□□ 0.35
USP39-220ENST00000613444 ATP2B4P23634 1241 aa17.21■□□□□ 0.35
USP39-220ENST00000613444 HIBADHP31937 336 aaKnown RBP17.21■□□□□ 0.35
USP39-220ENST00000613444 PTH1RQ03431 593 aa17.21■□□□□ 0.35
USP39-220ENST00000613444 OLFM4Q6UX06 510 aa17.21■□□□□ 0.35
USP39-220ENST00000613444 ZNF622Q969S3 477 aaKnown RBP eCLIP17.21■□□□□ 0.35
USP39-220ENST00000613444 POLLQ9UGP5 575 aa17.21■□□□□ 0.35
USP39-220ENST00000613444 IQSEC3Q9UPP2 1182 aaPredicted RBP17.21■□□□□ 0.35
USP39-220ENST00000613444 TBC1D16Q8TBP0 767 aa17.21■□□□□ 0.34
USP39-220ENST00000613444 GPR101Q96P66 508 aaPredicted RBP17.21■□□□□ 0.34
USP39-220ENST00000613444 MTFR1LQ9H019 292 aa17.21■□□□□ 0.34
USP39-220ENST00000613444 GNL3LQ9NVN8 582 aaKnown RBP17.21■□□□□ 0.34
USP39-220ENST00000613444 SEMA3EO15041 775 aa17.2■□□□□ 0.34
USP39-220ENST00000613444 MCMDC2Q4G0Z9 681 aa17.2■□□□□ 0.34
USP39-220ENST00000613444 IPO9Q96P70 1041 aaKnown RBP17.2■□□□□ 0.34
USP39-220ENST00000613444 HELLSQ9NRZ9 838 aa17.2■□□□□ 0.34
USP39-220ENST00000613444 GGA1Q9UJY5 639 aa17.2■□□□□ 0.34
USP39-220ENST00000613444 CCDC171Q6TFL3 1326 aa17.2■□□□□ 0.34
USP39-220ENST00000613444 UFL1O94874 794 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 ZFYP08048 801 aaPredicted RBP17.19■□□□□ 0.34
USP39-220ENST00000613444 ADD2P35612 726 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 VPS37DQ86XT2 251 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 IL17RAQ96F46 866 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 PDS5AQ29RF7 1337 aaKnown RBP17.19■□□□□ 0.34
USP39-220ENST00000613444 CHD4Q14839 1912 aa17.19■□□□□ 0.34
USP39-220ENST00000613444 MAST3O60307 1309 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms