RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 USP17L10C9JJH3 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L13C9JLJ4 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L12C9JPN9 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L11C9JVI0 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L21D6R901 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L18D6R9N7 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L22D6RA61 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L17D6RBQ6 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L19D6RCP7 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L20D6RJB6 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 FOXO3O43524 673 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 USP17L24Q0WX57 530 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 KANK4Q5T7N3 995 aaPredicted RBP7.76□□□□□ -1.17
LINC00540-201ENST00000611481 MYO19Q96H55 970 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 MRPL18Q9H0U6 180 aaKnown RBP7.76□□□□□ -1.17
LINC00540-201ENST00000611481 PCMTD2Q9NV79 361 aa7.76□□□□□ -1.17
LINC00540-201ENST00000611481 RTCBQ9Y3I0 505 aaKnown RBP7.76□□□□□ -1.17
LINC00540-201ENST00000611481 EGFRP00533 1210 aa7.75□□□□□ -1.17
LINC00540-201ENST00000611481 WEE1P30291 646 aa7.75□□□□□ -1.17
LINC00540-201ENST00000611481 TMEM130Q8N3G9 435 aa7.75□□□□□ -1.17
LINC00540-201ENST00000611481 DCAF11Q8TEB1 546 aa7.75□□□□□ -1.17
LINC00540-201ENST00000611481 PLD4Q96BZ4 506 aa7.75□□□□□ -1.17
LINC00540-201ENST00000611481 PPP1R12CQ9BZL4 782 aa7.75□□□□□ -1.17
LINC00540-201ENST00000611481 SRA1Q9HD15 236 aaKnown RBP7.75□□□□□ -1.17
LINC00540-201ENST00000611481 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.75□□□□□ -1.177e-8■■■■■ 186.3
LINC00540-201ENST00000611481 NEO1Q92859 1461 aa7.75□□□□□ -1.17
LINC00540-201ENST00000611481 BIVM-ERCC5R4GMW8 1640 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 SETD1BQ9UPS6 1966 aaKnown RBP7.74□□□□□ -1.17
LINC00540-201ENST00000611481 OPLAHO14841 1288 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 XYLBO75191 536 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 PSAPP07602 524 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 FSTP19883 344 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 MCTP1Q6DN14 999 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 PROSER2Q86WR7 435 aaPredicted RBP7.74□□□□□ -1.17
LINC00540-201ENST00000611481 VRTNQ9H8Y1 702 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 SRCAPQ6ZRS2 3230 aa7.74□□□□□ -1.17
LINC00540-201ENST00000611481 IQGAP2Q13576 1575 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 LOC102724428A0A0B4J2F2 783 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 F8W735 103 aaPredicted RBP7.73□□□□□ -1.17
LINC00540-201ENST00000611481 ALX3O95076 343 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 SIK1P57059 783 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 MAP4K3Q8IVH8 894 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 FNBP4Q8N3X1 1017 aaPredicted RBP7.73□□□□□ -1.17
LINC00540-201ENST00000611481 RBSNQ9H1K0 784 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 GOLGA2P5Q9HBQ8 144 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 KIAA0556O60303 1618 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 ARHGEF12Q9NZN5 1544 aa7.73□□□□□ -1.17
LINC00540-201ENST00000611481 J3QW42 95 aa7.72□□□□□ -1.17
LINC00540-201ENST00000611481 GHRHP01286 108 aa7.72□□□□□ -1.17
LINC00540-201ENST00000611481 GDF6Q6KF10 455 aaPredicted RBP7.72□□□□□ -1.17
LINC00540-201ENST00000611481 RGL4Q8IZJ4 473 aa7.72□□□□□ -1.17
LINC00540-201ENST00000611481 CMTR1Q8N1G2 835 aaKnown RBP7.72□□□□□ -1.17
LINC00540-201ENST00000611481 IL22RA1Q8N6P7 574 aa7.72□□□□□ -1.17
LINC00540-201ENST00000611481 CLUAP1Q96AJ1 413 aa7.72□□□□□ -1.17
LINC00540-201ENST00000611481 CALR3Q96L12 384 aaKnown RBP7.72□□□□□ -1.17
LINC00540-201ENST00000611481 USP20Q9Y2K6 914 aa7.72□□□□□ -1.17
LINC00540-201ENST00000611481 DENND4BO75064 1496 aaPredicted RBP7.72□□□□□ -1.17
LINC00540-201ENST00000611481 ZFYVE16Q7Z3T8 1539 aa7.72□□□□□ -1.17
LINC00540-201ENST00000611481 ARID3CA6NKF2 412 aa7.71□□□□□ -1.18
LINC00540-201ENST00000611481 SOX18P35713 384 aa7.71□□□□□ -1.18
LINC00540-201ENST00000611481 ARXQ96QS3 562 aa7.71□□□□□ -1.18
LINC00540-201ENST00000611481 BTBD11A6QL63 1104 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 MMP20O60882 483 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 PTCD1O75127 700 aaKnown RBP7.7□□□□□ -1.18
LINC00540-201ENST00000611481 HOXD8P13378 290 aaPredicted RBP7.7□□□□□ -1.18
LINC00540-201ENST00000611481 LMOD1P29536 600 aaPredicted RBP7.7□□□□□ -1.18
LINC00540-201ENST00000611481 SSTR4P31391 388 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 Q6ZS46 218 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 TREML1Q86YW5 311 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 CACTIN-AS1Q8N1I8 211 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 NSUN5Q96P11 429 aaKnown RBP7.7□□□□□ -1.18
LINC00540-201ENST00000611481 MUC3BQ9H195 1237 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 LRFN2Q9ULH4 789 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 CAMSAP1Q5T5Y3 1602 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 ABCA9Q8IUA7 1624 aa7.7□□□□□ -1.18
LINC00540-201ENST00000611481 RICTORQ6R327 1708 aa7.69□□□□□ -1.18
LINC00540-201ENST00000611481 EFCAB5A4FU69 1503 aa7.69□□□□□ -1.18
LINC00540-201ENST00000611481 CD97P48960 835 aa7.69□□□□□ -1.18
LINC00540-201ENST00000611481 SETDB1Q15047 1291 aa7.69□□□□□ -1.18
LINC00540-201ENST00000611481 KRTAP19-1Q8IUB9 90 aa7.69□□□□□ -1.18
LINC00540-201ENST00000611481 GSC2O15499 205 aa7.68□□□□□ -1.18
LINC00540-201ENST00000611481 GLB1P16278 677 aa7.68□□□□□ -1.18
LINC00540-201ENST00000611481 FAM200AQ8TCP9 573 aa7.68□□□□□ -1.18
LINC00540-201ENST00000611481 RAXQ9Y2V3 346 aa7.68□□□□□ -1.18
LINC00540-201ENST00000611481 KCNMB2Q9Y691 235 aa7.68□□□□□ -1.18
LINC00540-201ENST00000611481 FHOD3Q2V2M9 1422 aa7.68□□□□□ -1.18
LINC00540-201ENST00000611481 PAX4O43316 350 aa7.67□□□□□ -1.18
LINC00540-201ENST00000611481 COX20Q5RI15 118 aa7.66□□□□□ -1.18
LINC00540-201ENST00000611481 NLRP13Q86W25 1043 aa7.66□□□□□ -1.18
LINC00540-201ENST00000611481 AGGF1Q8N302 714 aaeCLIP7.66□□□□□ -1.184e-7■■■■■ 65.7
LINC00540-201ENST00000611481 STOML1Q9UBI4 398 aa7.66□□□□□ -1.18
LINC00540-201ENST00000611481 TRIM33Q9UPN9 1127 aa7.66□□□□□ -1.18
LINC00540-201ENST00000611481 PPME1Q9Y570 386 aa7.66□□□□□ -1.18
LINC00540-201ENST00000611481 TRAPPC8Q9Y2L5 1435 aa7.66□□□□□ -1.18
LINC00540-201ENST00000611481 ZMYM4Q5VZL5 1548 aa7.66□□□□□ -1.18
LINC00540-201ENST00000611481 ABCA8O94911 1581 aa7.65□□□□□ -1.18
LINC00540-201ENST00000611481 IGLV1-40P01703 118 aa7.65□□□□□ -1.18
LINC00540-201ENST00000611481 PTPRKQ15262 1439 aa7.65□□□□□ -1.18
LINC00540-201ENST00000611481 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.65□□□□□ -1.18
LINC00540-201ENST00000611481 UGGT2Q9NYU1 1516 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms