RNA–Protein interactions for RNA: ENST00000606394.5

CTSA-212, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-212ENST00000606394 STRIP1Q5VSL9 837 aa17.27■□□□□ 0.36
CTSA-212ENST00000606394 PRAMEF18Q5VWM3 479 aa17.27■□□□□ 0.36
CTSA-212ENST00000606394 LAS1LQ9Y4W2 734 aaKnown RBP17.27■□□□□ 0.36
CTSA-212ENST00000606394 DDX10Q13206 875 aaKnown RBP17.26■□□□□ 0.35
CTSA-212ENST00000606394 HABP4Q5JVS0 413 aaKnown RBP17.26■□□□□ 0.35
CTSA-212ENST00000606394 LDLRAD1Q5T700 205 aa17.26■□□□□ 0.35
CTSA-212ENST00000606394 DUSP27Q5VZP5 1158 aa17.26■□□□□ 0.35
CTSA-212ENST00000606394 APOBEC3FQ8IUX4 373 aaKnown RBP17.26■□□□□ 0.35
CTSA-212ENST00000606394 CDC5LQ99459 802 aaKnown RBP17.26■□□□□ 0.35
CTSA-212ENST00000606394 TRIM35Q9UPQ4 493 aa17.26■□□□□ 0.35
CTSA-212ENST00000606394 KIAA0100Q14667 2235 aaKnown RBP17.26■□□□□ 0.35
CTSA-212ENST00000606394 BRCA2P51587 3418 aa17.25■□□□□ 0.35
CTSA-212ENST00000606394 MANSC4A6NHS7 340 aaPredicted RBP17.25■□□□□ 0.35
CTSA-212ENST00000606394 PTPN12Q05209 780 aaKnown RBP17.25■□□□□ 0.35
CTSA-212ENST00000606394 NEUROD2Q15784 382 aa17.25■□□□□ 0.35
CTSA-212ENST00000606394 SPRYD7Q5W111 196 aa17.25■□□□□ 0.35
CTSA-212ENST00000606394 CWC25Q9NXE8 425 aaPredicted RBP17.25■□□□□ 0.35
CTSA-212ENST00000606394 SCAF8Q9UPN6 1271 aaKnown RBP17.25■□□□□ 0.35
CTSA-212ENST00000606394 COL1A1P02452 1464 aaPredicted RBP17.24■□□□□ 0.35
CTSA-212ENST00000606394 UNCXA6NJT0 531 aa17.24■□□□□ 0.35
CTSA-212ENST00000606394 RALBP1Q15311 655 aa17.24■□□□□ 0.35
CTSA-212ENST00000606394 COA1Q9GZY4 146 aa17.24■□□□□ 0.35
CTSA-212ENST00000606394 BSDC1Q9NW68 430 aaPredicted RBP17.24■□□□□ 0.35
CTSA-212ENST00000606394 ZBTB48P10074 688 aaPredicted RBP17.23■□□□□ 0.35
CTSA-212ENST00000606394 MKRN3Q13064 507 aaKnown RBP17.23■□□□□ 0.35
CTSA-212ENST00000606394 RUNDC1Q96C34 613 aa17.23■□□□□ 0.35
CTSA-212ENST00000606394 MYD88Q99836 296 aa17.23■□□□□ 0.35
CTSA-212ENST00000606394 CHMP4AQ9BY43 222 aa17.23■□□□□ 0.35
CTSA-212ENST00000606394 R3HDMLQ9H3Y0 253 aa17.23■□□□□ 0.35
CTSA-212ENST00000606394 MAP3K11Q16584 847 aa17.22■□□□□ 0.35
CTSA-212ENST00000606394 OTOP1Q7RTM1 612 aa17.22■□□□□ 0.35
CTSA-212ENST00000606394 IFNL1Q8IU54 200 aa17.22■□□□□ 0.35
CTSA-212ENST00000606394 MINPP1Q9UNW1 487 aa17.22■□□□□ 0.35
CTSA-212ENST00000606394 TRIM17Q9Y577 477 aa17.22■□□□□ 0.35
CTSA-212ENST00000606394 RBBP6Q7Z6E9 1792 aaKnown RBP17.22■□□□□ 0.35
CTSA-212ENST00000606394 ZNF646O15015 1829 aaPredicted RBP17.21■□□□□ 0.35
CTSA-212ENST00000606394 DDX58O95786 925 aaKnown RBP17.21■□□□□ 0.35
CTSA-212ENST00000606394 CCT4P50991 539 aaKnown RBP17.21■□□□□ 0.35
CTSA-212ENST00000606394 CTSWP56202 376 aa17.21■□□□□ 0.35
CTSA-212ENST00000606394 CCDC85AQ96PX6 553 aaPredicted RBP17.21■□□□□ 0.35
CTSA-212ENST00000606394 METTL22Q9BUU2 404 aaPredicted RBP17.21■□□□□ 0.35
CTSA-212ENST00000606394 ANGEL1Q9UNK9 670 aaKnown RBP17.21■□□□□ 0.35
CTSA-212ENST00000606394 LEMD3Q9Y2U8 911 aa17.21■□□□□ 0.35
CTSA-212ENST00000606394 CEP290O15078 2479 aa17.2■□□□□ 0.34
CTSA-212ENST00000606394 SLC10A4Q96EP9 437 aa17.2■□□□□ 0.34
CTSA-212ENST00000606394 ERO1AQ96HE7 468 aa17.2■□□□□ 0.34
CTSA-212ENST00000606394 ZBED3Q96IU2 234 aaPredicted RBP17.2■□□□□ 0.34
CTSA-212ENST00000606394 PHAXQ9H814 394 aaKnown RBP17.2■□□□□ 0.34
CTSA-212ENST00000606394 MBIPQ9NS73 344 aa17.2■□□□□ 0.34
CTSA-212ENST00000606394 PPP2R3BQ9Y5P8 575 aa17.2■□□□□ 0.34
CTSA-212ENST00000606394 LAMB1P07942 1786 aa17.2■□□□□ 0.34
CTSA-212ENST00000606394 POTEFA5A3E0 1075 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 ANP32CO43423 234 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 PPP1R12BO60237 982 aaPredicted RBP17.19■□□□□ 0.34
CTSA-212ENST00000606394 SASH1O94885 1247 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 TTLL5Q6EMB2 1281 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 OTUD7BQ6GQQ9 843 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 CCDC146Q8IYE0 955 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 TTLL11Q8NHH1 800 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 FBXW7Q969H0 707 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 ARMC5Q96C12 935 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 MXD3Q9BW11 206 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 PTPN22Q9Y2R2 807 aa17.19■□□□□ 0.34
CTSA-212ENST00000606394 ZNF853P0CG23 659 aa17.18■□□□□ 0.34
CTSA-212ENST00000606394 PRKG1Q13976 671 aa17.18■□□□□ 0.34
CTSA-212ENST00000606394 DEFB129Q9H1M3 183 aa17.18■□□□□ 0.34
CTSA-212ENST00000606394 WTIPA6NIX2 430 aaPredicted RBP17.17■□□□□ 0.34
CTSA-212ENST00000606394 MTMR14Q8NCE2 650 aa17.17■□□□□ 0.34
CTSA-212ENST00000606394 MYH3P11055 1940 aa17.17■□□□□ 0.34
CTSA-212ENST00000606394 CCER2I3L3R5 266 aa17.16■□□□□ 0.34
CTSA-212ENST00000606394 IGF2BP3O00425 579 aaKnown RBP eCLIP17.16■□□□□ 0.34
CTSA-212ENST00000606394 CALD1Q05682 793 aaKnown RBP17.16■□□□□ 0.34
CTSA-212ENST00000606394 KIAA0825Q8IV33 1275 aa17.16■□□□□ 0.34
CTSA-212ENST00000606394 JARID2Q92833 1246 aaPredicted RBP17.16■□□□□ 0.34
CTSA-212ENST00000606394 WNK4Q96J92 1243 aa17.16■□□□□ 0.34
CTSA-212ENST00000606394 ANKRD2Q9GZV1 360 aa17.16■□□□□ 0.34
CTSA-212ENST00000606394 GREM2Q9H772 168 aa17.16■□□□□ 0.34
CTSA-212ENST00000606394 IFT57Q9NWB7 429 aa17.16■□□□□ 0.34
CTSA-212ENST00000606394 ZNF804BA4D1E1 1349 aa17.16■□□□□ 0.34
CTSA-212ENST00000606394 IGHMBP2P38935 993 aaKnown RBP17.15■□□□□ 0.34
CTSA-212ENST00000606394 FXR1P51114 621 aaKnown RBP eCLIP17.15■□□□□ 0.34
CTSA-212ENST00000606394 WDR43Q15061 677 aaKnown RBP eCLIP17.15■□□□□ 0.34
CTSA-212ENST00000606394 DLGAP5Q15398 846 aa17.15■□□□□ 0.34
CTSA-212ENST00000606394 SUPT20HL1Q3ZLR7 823 aa17.15■□□□□ 0.34
CTSA-212ENST00000606394 TXNRD3Q86VQ6 643 aa17.15■□□□□ 0.34
CTSA-212ENST00000606394 EFCC1Q9HA90 598 aa17.15■□□□□ 0.34
CTSA-212ENST00000606394 GNAI1P63096 354 aa17.14■□□□□ 0.33
CTSA-212ENST00000606394 NEXNQ0ZGT2 675 aa17.14■□□□□ 0.33
CTSA-212ENST00000606394 CCDC30Q5VVM6 783 aa17.14■□□□□ 0.33
CTSA-212ENST00000606394 MAP3K2Q9Y2U5 619 aa17.14■□□□□ 0.33
CTSA-212ENST00000606394 MYBBP1AQ9BQG0 1328 aaKnown RBP17.14■□□□□ 0.33
CTSA-212ENST00000606394 TESPA1A2RU30 521 aaPredicted RBP17.13■□□□□ 0.33
CTSA-212ENST00000606394 MYO1BO43795 1136 aa17.13■□□□□ 0.33
CTSA-212ENST00000606394 IGKV5-2P06315 115 aa17.13■□□□□ 0.33
CTSA-212ENST00000606394 GTF2IP78347 998 aa17.13■□□□□ 0.33
CTSA-212ENST00000606394 SP3Q02447 781 aa17.13■□□□□ 0.33
CTSA-212ENST00000606394 CRHR2Q13324 411 aa17.13■□□□□ 0.33
CTSA-212ENST00000606394 ARHGEF6Q15052 776 aa17.13■□□□□ 0.33
CTSA-212ENST00000606394 KSR2Q6VAB6 950 aa17.13■□□□□ 0.33
CTSA-212ENST00000606394 CD99L2Q8TCZ2 262 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms