RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ITGA6P23229 1130 aa22.43■■□□□ 1.18
SHKBP1-223ENST00000600552 PODNQ7Z5L7 613 aa22.43■■□□□ 1.18
SHKBP1-223ENST00000600552 MPHOSPH8Q99549 860 aa22.43■■□□□ 1.18
SHKBP1-223ENST00000600552 F6X3S4 739 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 KCNJ4P48050 445 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 ZNF157P51786 506 aaPredicted RBP22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 RGMBQ6NW40 437 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 WDR63Q8IWG1 891 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 CDCA5Q96FF9 252 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 ABHD8Q96I13 439 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 MYOZ2Q9NPC6 264 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 THSD7BQ9C0I4 1608 aa22.42■■□□□ 1.18
SHKBP1-223ENST00000600552 ZNF280AP59817 542 aaPredicted RBP22.41■■□□□ 1.18
SHKBP1-223ENST00000600552 NOGQ13253 232 aa22.41■■□□□ 1.18
SHKBP1-223ENST00000600552 LINS1Q8NG48 757 aa22.41■■□□□ 1.18
SHKBP1-223ENST00000600552 BRPF1P55201 1214 aaPredicted RBP22.4■■□□□ 1.18
SHKBP1-223ENST00000600552 TXNRD3Q86VQ6 643 aa22.4■■□□□ 1.18
SHKBP1-223ENST00000600552 GMLQ99445 158 aa22.4■■□□□ 1.18
SHKBP1-223ENST00000600552 CASP8AP2Q9UKL3 1982 aa22.39■■□□□ 1.18
SHKBP1-223ENST00000600552 MED23Q9ULK4 1368 aa22.39■■□□□ 1.18
SHKBP1-223ENST00000600552 KLRK1P26718 216 aa22.39■■□□□ 1.17
SHKBP1-223ENST00000600552 ANKRD2Q9GZV1 360 aa22.39■■□□□ 1.17
SHKBP1-223ENST00000600552 SPINK5Q9NQ38 1064 aaPredicted RBP22.39■■□□□ 1.17
SHKBP1-223ENST00000600552 LEMD3Q9Y2U8 911 aa22.39■■□□□ 1.17
SHKBP1-223ENST00000600552 ZNF804BA4D1E1 1349 aa22.38■■□□□ 1.17
SHKBP1-223ENST00000600552 ANKRD18BA2A2Z9 1011 aa22.38■■□□□ 1.17
SHKBP1-223ENST00000600552 CCDC85CA6NKD9 419 aa22.38■■□□□ 1.17
SHKBP1-223ENST00000600552 CASP7P55210 303 aa22.38■■□□□ 1.17
SHKBP1-223ENST00000600552 PRAMEF18Q5VWM3 479 aa22.38■■□□□ 1.17
SHKBP1-223ENST00000600552 HELBQ8NG08 1087 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-223ENST00000600552 PLA2G12BQ9BX93 195 aa22.38■■□□□ 1.17
SHKBP1-223ENST00000600552 CA12O43570 354 aa22.37■■□□□ 1.17
SHKBP1-223ENST00000600552 KIF23Q02241 960 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-223ENST00000600552 NBPF9Q3BBW0 867 aa22.37■■□□□ 1.17
SHKBP1-223ENST00000600552 DACT2Q5SW24 774 aa22.37■■□□□ 1.17
SHKBP1-223ENST00000600552 OGFOD1Q8N543 542 aa22.37■■□□□ 1.17
SHKBP1-223ENST00000600552 CCDC102AQ96A19 550 aa22.37■■□□□ 1.17
SHKBP1-223ENST00000600552 COA1Q9GZY4 146 aa22.37■■□□□ 1.17
SHKBP1-223ENST00000600552 PSME4Q14997 1843 aa22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 SNAP23O00161 211 aa22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 TAF5LO75529 589 aa22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 CSF1RP07333 972 aa22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 CHRNDQ07001 517 aa22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 NCBP3Q53F19 620 aaKnown RBP22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 TTLL5Q6EMB2 1281 aa22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 CACNA1FO60840 1977 aa22.36■■□□□ 1.17
SHKBP1-223ENST00000600552 FAM155AB1AL88 458 aaPredicted RBP22.35■■□□□ 1.17
SHKBP1-223ENST00000600552 PLIN1O60240 522 aa22.35■■□□□ 1.17
SHKBP1-223ENST00000600552 GTF2IP78347 998 aa22.35■■□□□ 1.17
SHKBP1-223ENST00000600552 TTLL12Q14166 644 aaPredicted RBP22.35■■□□□ 1.17
SHKBP1-223ENST00000600552 SLC4A10Q6U841 1118 aa22.35■■□□□ 1.17
SHKBP1-223ENST00000600552 MOB2Q70IA6 237 aa22.35■■□□□ 1.17
SHKBP1-223ENST00000600552 SASH1O94885 1247 aa22.34■■□□□ 1.17
SHKBP1-223ENST00000600552 IFIT5Q13325 482 aaKnown RBP22.34■■□□□ 1.17
SHKBP1-223ENST00000600552 TAF7LQ5H9L4 462 aa22.34■■□□□ 1.17
SHKBP1-223ENST00000600552 STRIP1Q5VSL9 837 aa22.34■■□□□ 1.17
SHKBP1-223ENST00000600552 KIAA0825Q8IV33 1275 aa22.34■■□□□ 1.17
SHKBP1-223ENST00000600552 BEND3Q5T5X7 828 aa22.33■■□□□ 1.17
SHKBP1-223ENST00000600552 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.33■■□□□ 1.17
SHKBP1-223ENST00000600552 UBE2Q2LH0YL09 131 aa22.32■■□□□ 1.16
SHKBP1-223ENST00000600552 TRPA1O75762 1119 aa22.32■■□□□ 1.16
SHKBP1-223ENST00000600552 FOXO4P98177 505 aa22.32■■□□□ 1.16
SHKBP1-223ENST00000600552 LMBR1LQ6UX01 489 aa22.32■■□□□ 1.16
SHKBP1-223ENST00000600552 ZNF594Q96JF6 807 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-223ENST00000600552 C9orf78Q9NZ63 289 aaPredicted RBP22.32■■□□□ 1.16
SHKBP1-223ENST00000600552 DGKZQ13574 1117 aa22.31■■□□□ 1.16
SHKBP1-223ENST00000600552 PRKG1Q13976 671 aa22.31■■□□□ 1.16
SHKBP1-223ENST00000600552 MCOLN1Q9GZU1 580 aa22.31■■□□□ 1.16
SHKBP1-223ENST00000600552 MYO3BQ8WXR4 1341 aa22.31■■□□□ 1.16
SHKBP1-223ENST00000600552 WNT10BO00744 389 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 SLC10A3P09131 477 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 EPHA10Q5JZY3 1008 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 CD209Q9NNX6 404 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 HDAC9Q9UKV0 1011 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 JAG2Q9Y219 1238 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 ZNF609O15014 1411 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 PITPNM2Q9BZ72 1349 aa22.3■■□□□ 1.16
SHKBP1-223ENST00000600552 F8W031 263 aaPredicted RBP22.29■■□□□ 1.16
SHKBP1-223ENST00000600552 CCDC57Q2TAC2 916 aa22.29■■□□□ 1.16
SHKBP1-223ENST00000600552 CSRNP1Q96S65 589 aa22.29■■□□□ 1.16
SHKBP1-223ENST00000600552 CNNM1Q9NRU3 951 aa22.29■■□□□ 1.16
SHKBP1-223ENST00000600552 RNF186Q9NXI6 227 aa22.29■■□□□ 1.16
SHKBP1-223ENST00000600552 GRM8O00222 908 aa22.28■■□□□ 1.16
SHKBP1-223ENST00000600552 MKRN3Q13064 507 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-223ENST00000600552 RASAL3Q86YV0 1011 aa22.28■■□□□ 1.16
SHKBP1-223ENST00000600552 NF2P35240 595 aa22.27■■□□□ 1.16
SHKBP1-223ENST00000600552 LDHAL6AQ6ZMR3 332 aa22.27■■□□□ 1.16
SHKBP1-223ENST00000600552 AKAP11Q9UKA4 1901 aa22.27■■□□□ 1.16
SHKBP1-223ENST00000600552 FKBP1BP68106 108 aa22.26■■□□□ 1.15
SHKBP1-223ENST00000600552 SRCIN1Q9C0H9 1055 aa22.26■■□□□ 1.15
SHKBP1-223ENST00000600552 DLGAP5Q15398 846 aa22.25■■□□□ 1.15
SHKBP1-223ENST00000600552 ZNF804AQ7Z570 1209 aa22.25■■□□□ 1.15
SHKBP1-223ENST00000600552 PAPPA2Q9BXP8 1791 aa22.24■■□□□ 1.15
SHKBP1-223ENST00000600552 ZNF646O15015 1829 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-223ENST00000600552 ALDH1L1O75891 902 aa22.23■■□□□ 1.15
SHKBP1-223ENST00000600552 CERS5Q8N5B7 392 aa22.23■■□□□ 1.15
SHKBP1-223ENST00000600552 SAGE1Q9NXZ1 904 aa22.23■■□□□ 1.15
SHKBP1-223ENST00000600552 PCDHAC2Q9Y5I4 1007 aa22.23■■□□□ 1.15
SHKBP1-223ENST00000600552 RBM5P52756 815 aaKnown RBP eCLIP22.22■■□□□ 1.15
SHKBP1-223ENST00000600552 APOBEC3FQ8IUX4 373 aaKnown RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms