RNA–Protein interactions for RNA: ENST00000600244.5

SSBP4-207, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2

Gene SSBP4, Length 622 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-207ENST00000600244 WNK4Q96J92 1243 aa23.16■■□□□ 1.3
SSBP4-207ENST00000600244 PRO3102Q9H379 93 aa23.16■■□□□ 1.3
SSBP4-207ENST00000600244 TSPYL4Q9UJ04 414 aa23.16■■□□□ 1.3
SSBP4-207ENST00000600244 FZD1Q9UP38 647 aa23.16■■□□□ 1.3
SSBP4-207ENST00000600244 LAMB1P07942 1786 aa23.15■■□□□ 1.3
SSBP4-207ENST00000600244 SEC31BQ9NQW1 1179 aa23.15■■□□□ 1.3
SSBP4-207ENST00000600244 PPP2R1AP30153 589 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 NFE2L2Q16236 605 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 DACT2Q5SW24 774 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 NBPF11Q86T75 865 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 OGFOD1Q8N543 542 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 PLEKHF1Q96S99 279 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 MXD3Q9BW11 206 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 COL6A3P12111 3177 aa23.14■■□□□ 1.29
SSBP4-207ENST00000600244 IRS4O14654 1257 aaPredicted RBP23.13■■□□□ 1.29
SSBP4-207ENST00000600244 ZEB1P37275 1124 aaPredicted RBP23.13■■□□□ 1.29
SSBP4-207ENST00000600244 SLC4A8Q2Y0W8 1093 aa23.13■■□□□ 1.29
SSBP4-207ENST00000600244 APOBEC3FQ8IUX4 373 aaKnown RBP23.13■■□□□ 1.29
SSBP4-207ENST00000600244 CLMNQ96JQ2 1002 aa23.13■■□□□ 1.29
SSBP4-207ENST00000600244 ATP5J2-PTCD1G3V325 749 aa23.12■■□□□ 1.29
SSBP4-207ENST00000600244 SASH1O94885 1247 aa23.12■■□□□ 1.29
SSBP4-207ENST00000600244 MNX1P50219 401 aaPredicted RBP23.12■■□□□ 1.29
SSBP4-207ENST00000600244 SLC9C1Q4G0N8 1177 aa23.12■■□□□ 1.29
SSBP4-207ENST00000600244 RTL5Q5HYW3 569 aaPredicted RBP23.12■■□□□ 1.29
SSBP4-207ENST00000600244 PLBD2Q8NHP8 589 aa23.12■■□□□ 1.29
SSBP4-207ENST00000600244 PTPN18Q99952 460 aa23.12■■□□□ 1.29
SSBP4-207ENST00000600244 PTCH2Q9Y6C5 1203 aa23.12■■□□□ 1.29
SSBP4-207ENST00000600244 TESPA1A2RU30 521 aaPredicted RBP23.11■■□□□ 1.29
SSBP4-207ENST00000600244 UNCXA6NJT0 531 aa23.11■■□□□ 1.29
SSBP4-207ENST00000600244 NEFMP07197 916 aa23.11■■□□□ 1.29
SSBP4-207ENST00000600244 MMP14P50281 582 aa23.11■■□□□ 1.29
SSBP4-207ENST00000600244 TRIM28Q13263 835 aaKnown RBP23.11■■□□□ 1.29
SSBP4-207ENST00000600244 OTUD7BQ6GQQ9 843 aa23.11■■□□□ 1.29
SSBP4-207ENST00000600244 ZBED3Q96IU2 234 aaPredicted RBP23.11■■□□□ 1.29
SSBP4-207ENST00000600244 XDHP47989 1333 aa23.1■■□□□ 1.29
SSBP4-207ENST00000600244 WTIPA6NIX2 430 aaPredicted RBP23.09■■□□□ 1.29
SSBP4-207ENST00000600244 ATP2B4P23634 1241 aa23.09■■□□□ 1.29
SSBP4-207ENST00000600244 GJA5P36382 358 aa23.09■■□□□ 1.29
SSBP4-207ENST00000600244 ANKRD13DQ6ZTN6 518 aa23.09■■□□□ 1.29
SSBP4-207ENST00000600244 BABAM1Q9NWV8 329 aa23.09■■□□□ 1.29
SSBP4-207ENST00000600244 MYO3BQ8WXR4 1341 aa23.08■■□□□ 1.29
SSBP4-207ENST00000600244 ZNF646O15015 1829 aaPredicted RBP23.08■■□□□ 1.29
SSBP4-207ENST00000600244 STRIP1Q5VSL9 837 aa23.08■■□□□ 1.29
SSBP4-207ENST00000600244 DEFB129Q9H1M3 183 aa23.08■■□□□ 1.29
SSBP4-207ENST00000600244 SSC5DA1L4H1 1573 aa23.07■■□□□ 1.28
SSBP4-207ENST00000600244 ARHGEF6Q15052 776 aa23.07■■□□□ 1.28
SSBP4-207ENST00000600244 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.07■■□□□ 1.28
SSBP4-207ENST00000600244 COL1A1P02452 1464 aaPredicted RBP23.06■■□□□ 1.28
SSBP4-207ENST00000600244 DPF3Q92784 378 aa23.06■■□□□ 1.28
SSBP4-207ENST00000600244 PPP1R12BO60237 982 aaPredicted RBP23.05■■□□□ 1.28
SSBP4-207ENST00000600244 MYCP01106 439 aaPredicted RBP23.05■■□□□ 1.28
SSBP4-207ENST00000600244 MED23Q9ULK4 1368 aa23.04■■□□□ 1.28
SSBP4-207ENST00000600244 ZBTB38Q8NAP3 1195 aaPredicted RBP23.04■■□□□ 1.28
SSBP4-207ENST00000600244 SHISA4Q96DD7 197 aa23.04■■□□□ 1.28
SSBP4-207ENST00000600244 CHPF2Q9P2E5 772 aa23.04■■□□□ 1.28
SSBP4-207ENST00000600244 CCDC152Q4G0S7 254 aa23.03■■□□□ 1.28
SSBP4-207ENST00000600244 SH3TC2Q8TF17 1288 aa23.03■■□□□ 1.28
SSBP4-207ENST00000600244 MS4A4AQ96JQ5 239 aa23.02■■□□□ 1.28
SSBP4-207ENST00000600244 SOX1O00570 391 aaPredicted RBP23.01■■□□□ 1.27
SSBP4-207ENST00000600244 USP2O75604 605 aaPredicted RBP23.01■■□□□ 1.27
SSBP4-207ENST00000600244 UBE2Q1Q7Z7E8 422 aa23.01■■□□□ 1.27
SSBP4-207ENST00000600244 COA1Q9GZY4 146 aa23.01■■□□□ 1.27
SSBP4-207ENST00000600244 PPP2R3BQ9Y5P8 575 aa23.01■■□□□ 1.27
SSBP4-207ENST00000600244 A0A1W2PPC1 479 aa23■■□□□ 1.27
SSBP4-207ENST00000600244 HSP90B1P14625 803 aaKnown RBP23■■□□□ 1.27
SSBP4-207ENST00000600244 KRT24Q2M2I5 525 aa23■■□□□ 1.27
SSBP4-207ENST00000600244 KIAA0825Q8IV33 1275 aa23■■□□□ 1.27
SSBP4-207ENST00000600244 ANKRD18AQ8IVF6 992 aa23■■□□□ 1.27
SSBP4-207ENST00000600244 FBXW7Q969H0 707 aa23■■□□□ 1.27
SSBP4-207ENST00000600244 SUPT20HL1Q3ZLR7 823 aa22.99■■□□□ 1.27
SSBP4-207ENST00000600244 TTLL5Q6EMB2 1281 aa22.99■■□□□ 1.27
SSBP4-207ENST00000600244 PDE8AO60658 829 aa22.98■■□□□ 1.27
SSBP4-207ENST00000600244 IREB2P48200 963 aaKnown RBP22.98■■□□□ 1.27
SSBP4-207ENST00000600244 TXNRD3Q86VQ6 643 aa22.98■■□□□ 1.27
SSBP4-207ENST00000600244 ANKRD13AQ8IZ07 590 aa22.98■■□□□ 1.27
SSBP4-207ENST00000600244 LRCH3Q96II8 777 aa22.98■■□□□ 1.27
SSBP4-207ENST00000600244 CCDC85AQ96PX6 553 aaPredicted RBP22.98■■□□□ 1.27
SSBP4-207ENST00000600244 ZFYVE28Q9HCC9 887 aa22.98■■□□□ 1.27
SSBP4-207ENST00000600244 NBPF12Q5TAG4 269 aaPredicted RBP22.97■■□□□ 1.27
SSBP4-207ENST00000600244 MTMR14Q8NCE2 650 aa22.97■■□□□ 1.27
SSBP4-207ENST00000600244 BRI3BPQ8WY22 251 aa22.97■■□□□ 1.27
SSBP4-207ENST00000600244 MINPP1Q9UNW1 487 aa22.97■■□□□ 1.27
SSBP4-207ENST00000600244 ZBTB7BO15156 539 aaPredicted RBP22.96■■□□□ 1.27
SSBP4-207ENST00000600244 CCT4P50991 539 aaKnown RBP22.96■■□□□ 1.27
SSBP4-207ENST00000600244 MTFR1Q15390 333 aa22.96■■□□□ 1.27
SSBP4-207ENST00000600244 TAF1CQ15572 869 aaPredicted RBP22.96■■□□□ 1.27
SSBP4-207ENST00000600244 HTATIP2Q9BUP3 242 aa22.96■■□□□ 1.27
SSBP4-207ENST00000600244 DBF4Q9UBU7 674 aaPredicted RBP22.96■■□□□ 1.27
SSBP4-207ENST00000600244 ZNF804BA4D1E1 1349 aa22.96■■□□□ 1.27
SSBP4-207ENST00000600244 PCCAP05165 728 aaPredicted RBP22.95■■□□□ 1.26
SSBP4-207ENST00000600244 DLGAP5Q15398 846 aa22.95■■□□□ 1.26
SSBP4-207ENST00000600244 OPTNQ96CV9 577 aa22.95■■□□□ 1.26
SSBP4-207ENST00000600244 ARHGAP39Q9C0H5 1083 aa22.95■■□□□ 1.26
SSBP4-207ENST00000600244 NR2E3Q9Y5X4 410 aa22.95■■□□□ 1.26
SSBP4-207ENST00000600244 LAMA3Q16787 3333 aa22.94■■□□□ 1.26
SSBP4-207ENST00000600244 MAPK8IP3Q9UPT6 1336 aa22.94■■□□□ 1.26
SSBP4-207ENST00000600244 HDGFL1Q5TGJ6 251 aa22.94■■□□□ 1.26
SSBP4-207ENST00000600244 BSDC1Q9NW68 430 aaPredicted RBP22.94■■□□□ 1.26
SSBP4-207ENST00000600244 CHL1O00533 1208 aa22.93■■□□□ 1.26
SSBP4-207ENST00000600244 RIPK4P57078 832 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms