RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 DEFB115Q30KQ5 88 aa13.55□□□□□ -0.24
VRK3-214ENST00000598553 DACT2Q5SW24 774 aa13.55□□□□□ -0.24
VRK3-214ENST00000598553 TRMT2AQ8IZ69 625 aaKnown RBP13.55□□□□□ -0.24
VRK3-214ENST00000598553 ZIC5Q96T25 663 aa13.55□□□□□ -0.24
VRK3-214ENST00000598553 PUS3Q9BZE2 481 aaKnown RBP13.55□□□□□ -0.24
VRK3-214ENST00000598553 TLL2Q9Y6L7 1015 aa13.55□□□□□ -0.24
VRK3-214ENST00000598553 ZNF804BA4D1E1 1349 aa13.55□□□□□ -0.24
VRK3-214ENST00000598553 WDR33Q9C0J8 1336 aaKnown RBP13.55□□□□□ -0.24
VRK3-214ENST00000598553 ANKRD18BA2A2Z9 1011 aa13.54□□□□□ -0.24
VRK3-214ENST00000598553 E9PSI1 815 aa13.54□□□□□ -0.24
VRK3-214ENST00000598553 ZNF280AP59817 542 aaPredicted RBP13.54□□□□□ -0.24
VRK3-214ENST00000598553 ANKRD44Q8N8A2 993 aa13.54□□□□□ -0.24
VRK3-214ENST00000598553 CAPNS2Q96L46 248 aa13.54□□□□□ -0.24
VRK3-214ENST00000598553 SRCIN1Q9C0H9 1055 aa13.54□□□□□ -0.24
VRK3-214ENST00000598553 GGA3Q9NZ52 723 aa13.54□□□□□ -0.24
VRK3-214ENST00000598553 PCDHAC2Q9Y5I4 1007 aa13.54□□□□□ -0.24
VRK3-214ENST00000598553 USP17L3A6NCW0 530 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 USP17L4A6NCW7 530 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 G3V3G9 751 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 ALDH1L1O75891 902 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 RPS12P25398 132 aaKnown RBP13.53□□□□□ -0.24
VRK3-214ENST00000598553 DCAF8Q5TAQ9 597 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 USP17L1Q7RTZ2 530 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 SAPCD2Q86UD0 394 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 ZC3H15Q8WU90 426 aaKnown RBP13.53□□□□□ -0.24
VRK3-214ENST00000598553 FBXW7Q969H0 707 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 MPHOSPH8Q99549 860 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 JAG2Q9Y219 1238 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 UTYO14607 1347 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 AOX1Q06278 1338 aa13.53□□□□□ -0.24
VRK3-214ENST00000598553 MYH13Q9UKX3 1938 aa13.52□□□□□ -0.24
VRK3-214ENST00000598553 CCER2I3L3R5 266 aa13.52□□□□□ -0.25
VRK3-214ENST00000598553 ANGEL2Q5VTE6 544 aaKnown RBP13.52□□□□□ -0.25
VRK3-214ENST00000598553 PAXIP1Q6ZW49 1069 aaPredicted RBP13.52□□□□□ -0.25
VRK3-214ENST00000598553 CDC37L1Q7L3B6 337 aa13.52□□□□□ -0.25
VRK3-214ENST00000598553 KRT26Q7Z3Y9 468 aa13.52□□□□□ -0.25
VRK3-214ENST00000598553 PODNQ7Z5L7 613 aa13.52□□□□□ -0.25
VRK3-214ENST00000598553 CERS5Q8N5B7 392 aa13.52□□□□□ -0.25
VRK3-214ENST00000598553 BICC1Q9H694 974 aaKnown RBP13.52□□□□□ -0.25
VRK3-214ENST00000598553 WBP1LQ9NX94 342 aa13.52□□□□□ -0.25
VRK3-214ENST00000598553 C9orf78Q9NZ63 289 aaPredicted RBP13.52□□□□□ -0.25
VRK3-214ENST00000598553 LEMD3Q9Y2U8 911 aa13.52□□□□□ -0.25
VRK3-214ENST00000598553 IFIT5Q13325 482 aaKnown RBP13.51□□□□□ -0.25
VRK3-214ENST00000598553 SCARF1Q14162 830 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 NBPF9Q3BBW0 867 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 PRAMEF18Q5VWM3 479 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 AGBL3Q8NEM8 1001 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 KLHDC4Q8TBB5 520 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 CD209Q9NNX6 404 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 TSKSQ9UJT2 592 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 TNNQ9UQP3 1299 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 CASP8AP2Q9UKL3 1982 aa13.51□□□□□ -0.25
VRK3-214ENST00000598553 PLIN1O60240 522 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 SASH1O94885 1247 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 USP17L8P0C7I0 530 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 GTF2IP78347 998 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 LRRC24Q50LG9 513 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 MOB2Q70IA6 237 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 MIER1Q8N108 512 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 COA1Q9GZY4 146 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 USP44Q9H0E7 712 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 MYOZ2Q9NPC6 264 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 PAPPA2Q9BXP8 1791 aa13.5□□□□□ -0.25
VRK3-214ENST00000598553 PTPRCP08575 1304 aa13.49□□□□□ -0.25
VRK3-214ENST00000598553 HSPA8P11142 646 aaKnown RBP13.49□□□□□ -0.25
VRK3-214ENST00000598553 RABL6Q3YEC7 729 aaPredicted RBP13.49□□□□□ -0.25
VRK3-214ENST00000598553 KIAA0825Q8IV33 1275 aa13.49□□□□□ -0.25
VRK3-214ENST00000598553 CDCA5Q96FF9 252 aa13.49□□□□□ -0.25
VRK3-214ENST00000598553 ANKRD2Q9GZV1 360 aa13.49□□□□□ -0.25
VRK3-214ENST00000598553 SMC4Q9NTJ3 1288 aa13.49□□□□□ -0.25
VRK3-214ENST00000598553 KCNJ4P48050 445 aa13.48□□□□□ -0.25
VRK3-214ENST00000598553 LBX1P52954 281 aa13.48□□□□□ -0.25
VRK3-214ENST00000598553 STRIP1Q5VSL9 837 aa13.48□□□□□ -0.25
VRK3-214ENST00000598553 DCPSQ96C86 337 aaKnown RBP13.48□□□□□ -0.25
VRK3-214ENST00000598553 OTOFQ9HC10 1997 aa13.48□□□□□ -0.25
VRK3-214ENST00000598553 AKAP11Q9UKA4 1901 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 FAM155AB1AL88 458 aaPredicted RBP13.47□□□□□ -0.25
VRK3-214ENST00000598553 WNT10BO00744 389 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 CAPN15O75808 1086 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 GYG1P46976 350 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 GRIK5Q16478 980 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 CCDC57Q2TAC2 916 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 TTLL5Q6EMB2 1281 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 LDHAL6AQ6ZMR3 332 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 C15orf52Q6ZUT6 534 aaKnown RBP13.47□□□□□ -0.25
VRK3-214ENST00000598553 ZBED3Q96IU2 234 aaPredicted RBP13.47□□□□□ -0.25
VRK3-214ENST00000598553 GBA2Q9HCG7 927 aaPredicted RBP13.47□□□□□ -0.25
VRK3-214ENST00000598553 CNNM1Q9NRU3 951 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 NOB1Q9ULX3 412 aaKnown RBP13.47□□□□□ -0.25
VRK3-214ENST00000598553 FZD1Q9UP38 647 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 RIPOR2Q9Y4F9 1068 aa13.47□□□□□ -0.25
VRK3-214ENST00000598553 SSC5DA1L4H1 1573 aa13.46□□□□□ -0.25
VRK3-214ENST00000598553 F8W031 263 aaPredicted RBP13.46□□□□□ -0.25
VRK3-214ENST00000598553 RFX5P48382 616 aaPredicted RBP13.46□□□□□ -0.25
VRK3-214ENST00000598553 HUNKP57058 714 aa13.46□□□□□ -0.25
VRK3-214ENST00000598553 ALDH1L2Q3SY69 923 aa13.46□□□□□ -0.25
VRK3-214ENST00000598553 TAF7LQ5H9L4 462 aa13.46□□□□□ -0.25
VRK3-214ENST00000598553 TNS4Q8IZW8 715 aa13.46□□□□□ -0.25
VRK3-214ENST00000598553 VGLL2Q8N8G2 317 aa13.46□□□□□ -0.25
VRK3-214ENST00000598553 COL1A1P02452 1464 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms