RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 PI16Q6UXB8 463 aa20.44■□□□□ 0.86
SHKBP1-216ENST00000598201 COL23A1Q86Y22 540 aaPredicted RBP20.44■□□□□ 0.86
SHKBP1-216ENST00000598201 RFC4P35249 363 aa20.43■□□□□ 0.86
SHKBP1-216ENST00000598201 NUCB2P80303 420 aa20.43■□□□□ 0.86
SHKBP1-216ENST00000598201 ZMYM1Q5SVZ6 1142 aa20.43■□□□□ 0.86
SHKBP1-216ENST00000598201 HELBQ8NG08 1087 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-216ENST00000598201 INTS4Q96HW7 963 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-216ENST00000598201 RPAP1Q9BWH6 1393 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-216ENST00000598201 BCL2L12Q9HB09 334 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 ZDHHC9Q9Y397 364 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 SPEF2Q9C093 1822 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 ZAP70P43403 619 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 GBP4Q96PP9 640 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 HELLSQ9NRZ9 838 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 PDRG1Q9NUG6 133 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 CYP46A1Q9Y6A2 500 aa20.42■□□□□ 0.86
SHKBP1-216ENST00000598201 PSDA5PKW4 1024 aaPredicted RBP20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 RNF113AO15541 343 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 VPS53Q5VIR6 699 aa20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 RNF20Q5VTR2 975 aa20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 TICAM2Q86XR7 235 aa20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 DDX11L8A8MPP1 907 aa20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 CCDC152Q4G0S7 254 aa20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 CLEC17AQ6ZS10 378 aa20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 LIMCH1Q9UPQ0 1083 aa20.41■□□□□ 0.86
SHKBP1-216ENST00000598201 ABCC12Q96J65 1359 aa20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 MCAMP43121 646 aa20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 ERFEQ4G0M1 354 aa20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 TBC1D9BQ66K14 1250 aa20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 BICDL1Q6ZP65 573 aa20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 PDGFDQ9GZP0 370 aaPredicted RBP20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 SRP68Q9UHB9 627 aaKnown RBP20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 MROH5Q6ZUA9 1318 aa20.4■□□□□ 0.86
SHKBP1-216ENST00000598201 SNAP23O00161 211 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 ZPR1O75312 459 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 LARGE1O95461 756 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 FGFR2P21802 821 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 TSGA10IPQ3SY00 556 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 C3orf67Q6ZVT6 689 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 HMG20BQ9P0W2 317 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 NARFQ9UHQ1 456 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 MAST3O60307 1309 aa20.39■□□□□ 0.86
SHKBP1-216ENST00000598201 COL4A1P02462 1669 aa20.39■□□□□ 0.85
SHKBP1-216ENST00000598201 PUM3Q15397 648 aaKnown RBP20.39■□□□□ 0.85
SHKBP1-216ENST00000598201 MPHOSPH8Q99549 860 aa20.39■□□□□ 0.85
SHKBP1-216ENST00000598201 U3KPZ7 1027 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-216ENST00000598201 QSER1Q2KHR3 1735 aa20.39■□□□□ 0.85
SHKBP1-216ENST00000598201 LAMB2P55268 1798 aa20.39■□□□□ 0.85
SHKBP1-216ENST00000598201 RTL9Q8NET4 1388 aa20.39■□□□□ 0.85
SHKBP1-216ENST00000598201 M0R2C6 588 aa20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 TRAK2O60296 914 aa20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 BAG4O95429 457 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 OSBP2Q969R2 916 aa20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 SCN7AQ01118 1682 aa20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 PSMA5P28066 241 aa20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 PHKA1P46020 1223 aa20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 LPIN2Q92539 896 aa20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 ZNF512BQ96KM6 892 aaPredicted RBP20.38■□□□□ 0.85
SHKBP1-216ENST00000598201 HSP90B1P14625 803 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-216ENST00000598201 CCDC102BQ68D86 513 aa20.37■□□□□ 0.85
SHKBP1-216ENST00000598201 TCEANC2Q96MN5 208 aa20.37■□□□□ 0.85
SHKBP1-216ENST00000598201 AKAP11Q9UKA4 1901 aa20.37■□□□□ 0.85
SHKBP1-216ENST00000598201 CYP21A2P08686 494 aa20.36■□□□□ 0.85
SHKBP1-216ENST00000598201 RGL2O15211 777 aa20.36■□□□□ 0.85
SHKBP1-216ENST00000598201 BLOC1S2Q6QNY1 142 aa20.36■□□□□ 0.85
SHKBP1-216ENST00000598201 C4AP0C0L4 1744 aa20.36■□□□□ 0.85
SHKBP1-216ENST00000598201 HSPD1P10809 573 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-216ENST00000598201 RPS6KB1P23443 525 aa20.35■□□□□ 0.85
SHKBP1-216ENST00000598201 IGHMBP2P38935 993 aaKnown RBP20.35■□□□□ 0.85
SHKBP1-216ENST00000598201 DSCC1Q9BVC3 393 aa20.35■□□□□ 0.85
SHKBP1-216ENST00000598201 GYS1P13807 737 aa20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 ARID4AP29374 1257 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 FOXD4L5Q5VV16 416 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 SLC16A10Q8TF71 515 aa20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 FOXD4L4Q8WXT5 416 aaPredicted RBP20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 A0A0G2JLW4 131 aa20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 BRD1O95696 1058 aa20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 ST3GAL1Q11201 340 aa20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 TPCN1Q9ULQ1 816 aa20.34■□□□□ 0.85
SHKBP1-216ENST00000598201 ZFYP08048 801 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-216ENST00000598201 SLC5A1P13866 664 aa20.33■□□□□ 0.85
SHKBP1-216ENST00000598201 SF3B3Q15393 1217 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-216ENST00000598201 ME3Q16798 604 aa20.33■□□□□ 0.85
SHKBP1-216ENST00000598201 WASHC4Q2M389 1173 aa20.33■□□□□ 0.85
SHKBP1-216ENST00000598201 CHAMP1Q96JM3 812 aa20.33■□□□□ 0.85
SHKBP1-216ENST00000598201 PIH1D3Q9NQM4 214 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-216ENST00000598201 KRT32Q14532 448 aa20.33■□□□□ 0.84
SHKBP1-216ENST00000598201 LRRFIP1Q32MZ4 808 aaKnown RBP20.33■□□□□ 0.84
SHKBP1-216ENST00000598201 STOX1Q6ZVD7 989 aa20.33■□□□□ 0.84
SHKBP1-216ENST00000598201 ARAP2Q8WZ64 1704 aa20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 FOXP2O15409 715 aa20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 DTNBO60941 627 aa20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 CHRNDQ07001 517 aa20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 TOB2Q14106 344 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 CCDC83Q8IWF9 413 aa20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 ZSCAN31Q96LW9 406 aaPredicted RBP20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 NEK1Q96PY6 1258 aa20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 PUS7LQ9H0K6 701 aaKnown RBP20.32■□□□□ 0.84
SHKBP1-216ENST00000598201 UQCRFS1P1P0C7P4 283 aa20.31■□□□□ 0.84
SHKBP1-216ENST00000598201 SLC10A5Q5PT55 438 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms