RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 OTOFQ9HC10 1997 aa20.23■□□□□ 0.83
LIG1-214ENST00000597146 SSC5DA1L4H1 1573 aa20.23■□□□□ 0.83
LIG1-214ENST00000597146 WTIPA6NIX2 430 aaPredicted RBP20.23■□□□□ 0.83
LIG1-214ENST00000597146 LDLRAD1Q5T700 205 aa20.23■□□□□ 0.83
LIG1-214ENST00000597146 CCDC85AQ96PX6 553 aaPredicted RBP20.23■□□□□ 0.83
LIG1-214ENST00000597146 MANSC4A6NHS7 340 aaPredicted RBP20.22■□□□□ 0.83
LIG1-214ENST00000597146 ANKRD13DQ6ZTN6 518 aa20.22■□□□□ 0.83
LIG1-214ENST00000597146 FBXW7Q969H0 707 aa20.22■□□□□ 0.83
LIG1-214ENST00000597146 ERO1AQ96HE7 468 aa20.22■□□□□ 0.83
LIG1-214ENST00000597146 XDHP47989 1333 aa20.22■□□□□ 0.83
LIG1-214ENST00000597146 ZSWIM8A7E2V4 1837 aa20.21■□□□□ 0.83
LIG1-214ENST00000597146 DACT2Q5SW24 774 aa20.21■□□□□ 0.83
LIG1-214ENST00000597146 PODNQ7Z5L7 613 aa20.21■□□□□ 0.83
LIG1-214ENST00000597146 CLMNQ96JQ2 1002 aa20.21■□□□□ 0.83
LIG1-214ENST00000597146 CUL9Q8IWT3 2517 aa20.21■□□□□ 0.83
LIG1-214ENST00000597146 MYH3P11055 1940 aa20.2■□□□□ 0.82
LIG1-214ENST00000597146 H0YGN5 161 aa20.2■□□□□ 0.82
LIG1-214ENST00000597146 CRHR2Q13324 411 aa20.2■□□□□ 0.82
LIG1-214ENST00000597146 WNK4Q96J92 1243 aa20.2■□□□□ 0.82
LIG1-214ENST00000597146 EFCC1Q9HA90 598 aa20.2■□□□□ 0.82
LIG1-214ENST00000597146 RIPK4P57078 832 aa20.19■□□□□ 0.82
LIG1-214ENST00000597146 HDGFL1Q5TGJ6 251 aa20.19■□□□□ 0.82
LIG1-214ENST00000597146 OGFOD1Q8N543 542 aa20.19■□□□□ 0.82
LIG1-214ENST00000597146 ZNF333Q96JL9 665 aa20.19■□□□□ 0.82
LIG1-214ENST00000597146 BABAM1Q9NWV8 329 aa20.19■□□□□ 0.82
LIG1-214ENST00000597146 MED23Q9ULK4 1368 aa20.19■□□□□ 0.82
LIG1-214ENST00000597146 DLL1O00548 723 aa20.18■□□□□ 0.82
LIG1-214ENST00000597146 ATP2B4P23634 1241 aa20.18■□□□□ 0.82
LIG1-214ENST00000597146 APOBEC3FQ8IUX4 373 aaKnown RBP20.18■□□□□ 0.82
LIG1-214ENST00000597146 OTUD5Q96G74 571 aa20.18■□□□□ 0.82
LIG1-214ENST00000597146 TMEM106CQ9BVX2 250 aa20.18■□□□□ 0.82
LIG1-214ENST00000597146 COL1A1P02452 1464 aaPredicted RBP20.18■□□□□ 0.82
LIG1-214ENST00000597146 COL6A3P12111 3177 aa20.18■□□□□ 0.82
LIG1-214ENST00000597146 ZBTB48P10074 688 aaPredicted RBP20.17■□□□□ 0.82
LIG1-214ENST00000597146 INHBEP58166 350 aa20.17■□□□□ 0.82
LIG1-214ENST00000597146 CCDC152Q4G0S7 254 aa20.17■□□□□ 0.82
LIG1-214ENST00000597146 ZBTB38Q8NAP3 1195 aaPredicted RBP20.17■□□□□ 0.82
LIG1-214ENST00000597146 JARID2Q92833 1246 aaPredicted RBP20.17■□□□□ 0.82
LIG1-214ENST00000597146 SLC10A4Q96EP9 437 aa20.17■□□□□ 0.82
LIG1-214ENST00000597146 MYCP01106 439 aaPredicted RBP20.16■□□□□ 0.82
LIG1-214ENST00000597146 TRIM28Q13263 835 aaKnown RBP20.16■□□□□ 0.82
LIG1-214ENST00000597146 CHRDL2Q6WN34 429 aa20.16■□□□□ 0.82
LIG1-214ENST00000597146 ANKRD18AQ8IVF6 992 aa20.16■□□□□ 0.82
LIG1-214ENST00000597146 MYO3BQ8WXR4 1341 aa20.16■□□□□ 0.82
LIG1-214ENST00000597146 A0A0C4DFX4 3053 aa20.15■□□□□ 0.82
LIG1-214ENST00000597146 GJA5P36382 358 aa20.15■□□□□ 0.82
LIG1-214ENST00000597146 KIAA0825Q8IV33 1275 aa20.15■□□□□ 0.82
LIG1-214ENST00000597146 SP3Q02447 781 aa20.14■□□□□ 0.81
LIG1-214ENST00000597146 STRIP1Q5VSL9 837 aa20.14■□□□□ 0.81
LIG1-214ENST00000597146 ZBED3Q96IU2 234 aaPredicted RBP20.14■□□□□ 0.81
LIG1-214ENST00000597146 DBF4Q9UBU7 674 aaPredicted RBP20.14■□□□□ 0.81
LIG1-214ENST00000597146 PTCH2Q9Y6C5 1203 aa20.14■□□□□ 0.81
LIG1-214ENST00000597146 MAP3K11Q16584 847 aa20.13■□□□□ 0.81
LIG1-214ENST00000597146 SLC4A8Q2Y0W8 1093 aa20.13■□□□□ 0.81
LIG1-214ENST00000597146 SLC9C1Q4G0N8 1177 aa20.13■□□□□ 0.81
LIG1-214ENST00000597146 TXNRD3Q86VQ6 643 aa20.13■□□□□ 0.81
LIG1-214ENST00000597146 PTPN18Q99952 460 aa20.13■□□□□ 0.81
LIG1-214ENST00000597146 DEFB129Q9H1M3 183 aa20.13■□□□□ 0.81
LIG1-214ENST00000597146 PNNQ9H307 717 aaKnown RBP20.13■□□□□ 0.81
LIG1-214ENST00000597146 PDE8AO60658 829 aa20.12■□□□□ 0.81
LIG1-214ENST00000597146 MYD88Q99836 296 aa20.12■□□□□ 0.81
LIG1-214ENST00000597146 LAS1LQ9Y4W2 734 aaKnown RBP20.12■□□□□ 0.81
LIG1-214ENST00000597146 CHL1O00533 1208 aa20.11■□□□□ 0.81
LIG1-214ENST00000597146 TMPOP42166 694 aaKnown RBP20.11■□□□□ 0.81
LIG1-214ENST00000597146 RIC3Q7Z5B4 369 aa20.11■□□□□ 0.81
LIG1-214ENST00000597146 SLC17A8Q8NDX2 589 aa20.11■□□□□ 0.81
LIG1-214ENST00000597146 RBM27Q9P2N5 1060 aaKnown RBP20.11■□□□□ 0.81
LIG1-214ENST00000597146 PCCAP05165 728 aaPredicted RBP20.1■□□□□ 0.81
LIG1-214ENST00000597146 LMOD3Q0VAK6 560 aa20.1■□□□□ 0.81
LIG1-214ENST00000597146 OTUD7BQ6GQQ9 843 aa20.1■□□□□ 0.81
LIG1-214ENST00000597146 COA1Q9GZY4 146 aa20.1■□□□□ 0.81
LIG1-214ENST00000597146 HYPKQ9NX55 129 aa20.1■□□□□ 0.81
LIG1-214ENST00000597146 PCDHAC2Q9Y5I4 1007 aa20.1■□□□□ 0.81
LIG1-214ENST00000597146 HSP90B1P14625 803 aaKnown RBP20.09■□□□□ 0.81
LIG1-214ENST00000597146 KLRK1P26718 216 aa20.09■□□□□ 0.81
LIG1-214ENST00000597146 CCT4P50991 539 aaKnown RBP20.09■□□□□ 0.81
LIG1-214ENST00000597146 MINPP1Q9UNW1 487 aa20.09■□□□□ 0.81
LIG1-214ENST00000597146 A0A1B0GUL6 1792 aa20.08■□□□□ 0.81
LIG1-214ENST00000597146 PPP1R12BO60237 982 aaPredicted RBP20.08■□□□□ 0.81
LIG1-214ENST00000597146 HOXB7P09629 217 aa20.08■□□□□ 0.81
LIG1-214ENST00000597146 GOLGA2Q08379 1002 aa20.08■□□□□ 0.81
LIG1-214ENST00000597146 TTLL5Q6EMB2 1281 aa20.08■□□□□ 0.81
LIG1-214ENST00000597146 SH3TC2Q8TF17 1288 aa20.08■□□□□ 0.81
LIG1-214ENST00000597146 CDC5LQ99459 802 aaKnown RBP20.08■□□□□ 0.81
LIG1-214ENST00000597146 PHAXQ9H814 394 aaKnown RBP20.08■□□□□ 0.81
LIG1-214ENST00000597146 LAMA3Q16787 3333 aa20.07■□□□□ 0.8
LIG1-214ENST00000597146 NEUROD2Q15784 382 aa20.07■□□□□ 0.8
LIG1-214ENST00000597146 NBPF11Q86T75 865 aa20.07■□□□□ 0.8
LIG1-214ENST00000597146 AOX1Q06278 1338 aa20.06■□□□□ 0.8
LIG1-214ENST00000597146 CLRN2A0PK11 232 aa20.06■□□□□ 0.8
LIG1-214ENST00000597146 TESPA1A2RU30 521 aaPredicted RBP20.06■□□□□ 0.8
LIG1-214ENST00000597146 CTSWP56202 376 aa20.06■□□□□ 0.8
LIG1-214ENST00000597146 GTF2IP78347 998 aa20.06■□□□□ 0.8
LIG1-214ENST00000597146 DLGAP5Q15398 846 aa20.06■□□□□ 0.8
LIG1-214ENST00000597146 NBPF12Q5TAG4 269 aaPredicted RBP20.06■□□□□ 0.8
LIG1-214ENST00000597146 CCDC191Q8NCU4 936 aa20.06■□□□□ 0.8
LIG1-214ENST00000597146 CWC25Q9NXE8 425 aaPredicted RBP20.06■□□□□ 0.8
LIG1-214ENST00000597146 MMP14P50281 582 aa20.05■□□□□ 0.8
LIG1-214ENST00000597146 DUSP27Q5VZP5 1158 aa20.05■□□□□ 0.8
LIG1-214ENST00000597146 SHISA4Q96DD7 197 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms