RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 E9PSI1 815 aa13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 VIL1P09327 827 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 NBPF7P0C2Y1 421 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 IFFO2Q5TF58 517 aa13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 PRAMEF18Q5VWM3 479 aa13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 RSBN1LQ6PCB5 846 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 CAPNS2Q96L46 248 aa13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 PLA2G12BQ9BX93 195 aa13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 PUS3Q9BZE2 481 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-210ENST00000595874 USP17L3A6NCW0 530 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 USP17L4A6NCW7 530 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 F8W031 263 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 GTF2IP78347 998 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 SCARF1Q14162 830 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 CCDC57Q2TAC2 916 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 ANGEL2Q5VTE6 544 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 CDC37L1Q7L3B6 337 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 USP17L1Q7RTZ2 530 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 KRT26Q7Z3Y9 468 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 DCPSQ96C86 337 aaKnown RBP13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 CNNM1Q9NRU3 951 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 SMC4Q9NTJ3 1288 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 A0A1B0GUL6 1792 aa13.04□□□□□ -0.32
SHKBP1-210ENST00000595874 RASSF10A6NK89 507 aa13.03□□□□□ -0.32
SHKBP1-210ENST00000595874 SASH1O94885 1247 aa13.03□□□□□ -0.32
SHKBP1-210ENST00000595874 MIER1Q8N108 512 aa13.03□□□□□ -0.32
SHKBP1-210ENST00000595874 KLHDC4Q8TBB5 520 aa13.03□□□□□ -0.32
SHKBP1-210ENST00000595874 DPF2Q92785 391 aa13.03□□□□□ -0.32
SHKBP1-210ENST00000595874 ANKRD2Q9GZV1 360 aa13.03□□□□□ -0.32
SHKBP1-210ENST00000595874 MED23Q9ULK4 1368 aa13.03□□□□□ -0.32
SHKBP1-210ENST00000595874 PSME4Q14997 1843 aa13.02□□□□□ -0.32
SHKBP1-210ENST00000595874 ALDH1L1O75891 902 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 RPS12P25398 132 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 LDHAL6AQ6ZMR3 332 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 KIAA0825Q8IV33 1275 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 TNS4Q8IZW8 715 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 AIDAQ96BJ3 306 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 KAZALD1Q96I82 304 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 BICC1Q9H694 974 aaKnown RBP13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 MYOZ2Q9NPC6 264 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 LEMD3Q9Y2U8 911 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 PCDHAC2Q9Y5I4 1007 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 TLL2Q9Y6L7 1015 aa13.02□□□□□ -0.33
SHKBP1-210ENST00000595874 USP17L8P0C7I0 530 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 LBX1P52954 281 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 PRKG1Q13976 671 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 NBPF9Q3BBW0 867 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 DACT2Q5SW24 774 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 MOB2Q70IA6 237 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 PODNQ7Z5L7 613 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 ZIC5Q96T25 663 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 PGAP2Q9UHJ9 254 aa13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 NOB1Q9ULX3 412 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 IQSEC3Q9UPP2 1182 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 ZNF646O15015 1829 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-210ENST00000595874 CCER2I3L3R5 266 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 HUNKP57058 714 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 LRRC24Q50LG9 513 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 TTLL5Q6EMB2 1281 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 SAPCD2Q86UD0 394 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 AGBL3Q8NEM8 1001 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 CDCA5Q96FF9 252 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 GMLQ99445 158 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 COA1Q9GZY4 146 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 CD209Q9NNX6 404 aa13□□□□□ -0.33
SHKBP1-210ENST00000595874 GYG1P46976 350 aa12.99□□□□□ -0.33
SHKBP1-210ENST00000595874 SULF1Q8IWU6 871 aa12.99□□□□□ -0.33
SHKBP1-210ENST00000595874 ANKRD44Q8N8A2 993 aa12.99□□□□□ -0.33
SHKBP1-210ENST00000595874 ZC3H15Q8WU90 426 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-210ENST00000595874 FZD1Q9UP38 647 aa12.99□□□□□ -0.33
SHKBP1-210ENST00000595874 TNNQ9UQP3 1299 aa12.99□□□□□ -0.33
SHKBP1-210ENST00000595874 ECE1P42892 770 aa12.98□□□□□ -0.33
SHKBP1-210ENST00000595874 ZNF280AP59817 542 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-210ENST00000595874 DIEXFQ68CQ4 756 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-210ENST00000595874 CERS5Q8N5B7 392 aa12.98□□□□□ -0.33
SHKBP1-210ENST00000595874 GBA2Q9HCG7 927 aaPredicted RBP12.98□□□□□ -0.33
SHKBP1-210ENST00000595874 WBP1LQ9NX94 342 aa12.98□□□□□ -0.33
SHKBP1-210ENST00000595874 HSPA8P11142 646 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-210ENST00000595874 MKRN3Q13064 507 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-210ENST00000595874 CHAF1AQ13111 956 aaPredicted RBP12.97□□□□□ -0.33
SHKBP1-210ENST00000595874 TTLL12Q14166 644 aaPredicted RBP12.97□□□□□ -0.33
SHKBP1-210ENST00000595874 METTL24Q5JXM2 366 aa12.97□□□□□ -0.33
SHKBP1-210ENST00000595874 STRIP1Q5VSL9 837 aa12.97□□□□□ -0.33
SHKBP1-210ENST00000595874 C2orf69Q8N8R5 385 aa12.97□□□□□ -0.33
SHKBP1-210ENST00000595874 PTPRCP08575 1304 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 AOX1Q06278 1338 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 IRS2Q9Y4H2 1338 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 CLRN2A0PK11 232 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 CTCFP49711 727 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 RBM5P52756 815 aaKnown RBP eCLIP12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 HNRNPUQ00839 825 aaKnown RBP eCLIP12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 ZNF804AQ7Z570 1209 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 OGFOD1Q8N543 542 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 USP44Q9H0E7 712 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 SIL1Q9H173 461 aa12.96□□□□□ -0.33
SHKBP1-210ENST00000595874 UBE2Q2LH0YL09 131 aa12.95□□□□□ -0.34
SHKBP1-210ENST00000595874 WNT10BO00744 389 aa12.95□□□□□ -0.34
SHKBP1-210ENST00000595874 ZNF157P51786 506 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-210ENST00000595874 ALDH1L2Q3SY69 923 aa12.95□□□□□ -0.34
SHKBP1-210ENST00000595874 TRMT2AQ8IZ69 625 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms