RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 USP44Q9H0E7 712 aa22.28■■□□□ 1.16
SHKBP1-204ENST00000594862 BICC1Q9H694 974 aaKnown RBP22.28■■□□□ 1.16
SHKBP1-204ENST00000594862 KCNQ5Q9NR82 932 aa22.27■■□□□ 1.16
SHKBP1-204ENST00000594862 TRPM7Q96QT4 1865 aa22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 HSPA1AP0DMV8 641 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 HSPA1BP0DMV9 641 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 STRIP1Q5VSL9 837 aa22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 ZNF804AQ7Z570 1209 aa22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 TRPM4Q8TD43 1214 aa22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 ZBED9Q6R2W3 1325 aa22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 MROH5Q6ZUA9 1318 aa22.26■■□□□ 1.15
SHKBP1-204ENST00000594862 CDC37L1Q7L3B6 337 aa22.25■■□□□ 1.15
SHKBP1-204ENST00000594862 CNTNAP1P78357 1384 aa22.25■■□□□ 1.15
SHKBP1-204ENST00000594862 USP17L8P0C7I0 530 aa22.24■■□□□ 1.15
SHKBP1-204ENST00000594862 UBTFL1P0CB47 393 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-204ENST00000594862 ZNF280AP59817 542 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-204ENST00000594862 KIF4BQ2VIQ3 1234 aa22.24■■□□□ 1.15
SHKBP1-204ENST00000594862 TNS4Q8IZW8 715 aa22.24■■□□□ 1.15
SHKBP1-204ENST00000594862 ANKRD44Q8N8A2 993 aa22.24■■□□□ 1.15
SHKBP1-204ENST00000594862 ZNF594Q96JF6 807 aaPredicted RBP22.24■■□□□ 1.15
SHKBP1-204ENST00000594862 ZNF646O15015 1829 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 TAF5LO75529 589 aa22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 HIRAP54198 1017 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 UBE4AQ14139 1066 aa22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 TBC1D10BQ4KMP7 808 aaPredicted RBP22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 DACT2Q5SW24 774 aa22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 SAMD7Q7Z3H4 446 aa22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 GMLQ99445 158 aa22.23■■□□□ 1.15
SHKBP1-204ENST00000594862 WTIPA6NIX2 430 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-204ENST00000594862 TXNRD3Q86VQ6 643 aa22.22■■□□□ 1.15
SHKBP1-204ENST00000594862 OGFOD1Q8N543 542 aa22.22■■□□□ 1.15
SHKBP1-204ENST00000594862 DCPSQ96C86 337 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-204ENST00000594862 SHTN1A0MZ66 631 aa22.21■■□□□ 1.15
SHKBP1-204ENST00000594862 INTS3Q68E01 1043 aaKnown RBP22.21■■□□□ 1.15
SHKBP1-204ENST00000594862 HELBQ8NG08 1087 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-204ENST00000594862 FBXW7Q969H0 707 aa22.21■■□□□ 1.15
SHKBP1-204ENST00000594862 CD209Q9NNX6 404 aa22.21■■□□□ 1.15
SHKBP1-204ENST00000594862 IRS2Q9Y4H2 1338 aa22.21■■□□□ 1.15
SHKBP1-204ENST00000594862 RASSF10A6NK89 507 aa22.2■■□□□ 1.14
SHKBP1-204ENST00000594862 KLRK1P26718 216 aa22.2■■□□□ 1.14
SHKBP1-204ENST00000594862 TTLL5Q6EMB2 1281 aa22.2■■□□□ 1.14
SHKBP1-204ENST00000594862 GLIS2Q9BZE0 524 aaPredicted RBP22.2■■□□□ 1.14
SHKBP1-204ENST00000594862 ABT1Q9ULW3 272 aaKnown RBP22.2■■□□□ 1.14
SHKBP1-204ENST00000594862 RIPOR2Q9Y4F9 1068 aa22.2■■□□□ 1.14
SHKBP1-204ENST00000594862 PLIN1O60240 522 aa22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 CAPN15O75808 1086 aa22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 GNAI3P08754 354 aa22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 RBM26Q5T8P6 1007 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 ATF7IPQ6VMQ6 1270 aa22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 MYOZ2Q9NPC6 264 aa22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 MKRN1Q9UHC7 482 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 FBXO3Q9UK99 471 aa22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 HDAC9Q9UKV0 1011 aa22.19■■□□□ 1.14
SHKBP1-204ENST00000594862 TRAF5O00463 557 aa22.18■■□□□ 1.14
SHKBP1-204ENST00000594862 IL1R1P14778 569 aa22.18■■□□□ 1.14
SHKBP1-204ENST00000594862 METTL24Q5JXM2 366 aa22.18■■□□□ 1.14
SHKBP1-204ENST00000594862 PITPNM2Q9BZ72 1349 aa22.17■■□□□ 1.14
SHKBP1-204ENST00000594862 FKBP1AP62942 108 aaKnown RBP22.17■■□□□ 1.14
SHKBP1-204ENST00000594862 GTF2IP78347 998 aa22.17■■□□□ 1.14
SHKBP1-204ENST00000594862 DEFB115Q30KQ5 88 aa22.17■■□□□ 1.14
SHKBP1-204ENST00000594862 KRT26Q7Z3Y9 468 aa22.17■■□□□ 1.14
SHKBP1-204ENST00000594862 SULF1Q8IWU6 871 aa22.17■■□□□ 1.14
SHKBP1-204ENST00000594862 CELF2O95319 508 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-204ENST00000594862 EGFRP00533 1210 aa22.16■■□□□ 1.14
SHKBP1-204ENST00000594862 TRIM27P14373 513 aa22.16■■□□□ 1.14
SHKBP1-204ENST00000594862 FRAT1Q92837 279 aaPredicted RBP22.16■■□□□ 1.14
SHKBP1-204ENST00000594862 PUS3Q9BZE2 481 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-204ENST00000594862 GGA3Q9NZ52 723 aa22.16■■□□□ 1.14
SHKBP1-204ENST00000594862 PDE8BO95263 885 aa22.15■■□□□ 1.14
SHKBP1-204ENST00000594862 ECE1P42892 770 aa22.15■■□□□ 1.14
SHKBP1-204ENST00000594862 ZKSCAN2Q63HK3 967 aa22.15■■□□□ 1.14
SHKBP1-204ENST00000594862 TLL2Q9Y6L7 1015 aa22.15■■□□□ 1.14
SHKBP1-204ENST00000594862 SNAP23O00161 211 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 EYA2O00167 538 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 BCAR3O75815 825 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 HIBADHP31937 336 aaKnown RBP22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 SCARF1Q14162 830 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 CAVIN4Q5BKX8 364 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 CST9Q5W186 159 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 USP48Q86UV5 1035 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 HHIPL1Q96JK4 782 aa22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 LRRFIP2Q9Y608 721 aaKnown RBP22.14■■□□□ 1.13
SHKBP1-204ENST00000594862 CIAO1O76071 339 aa22.13■■□□□ 1.13
SHKBP1-204ENST00000594862 SASH1O94885 1247 aa22.13■■□□□ 1.13
SHKBP1-204ENST00000594862 RFX5P48382 616 aaPredicted RBP22.13■■□□□ 1.13
SHKBP1-204ENST00000594862 PUM3Q15397 648 aaKnown RBP22.13■■□□□ 1.13
SHKBP1-204ENST00000594862 LRRC24Q50LG9 513 aa22.13■■□□□ 1.13
SHKBP1-204ENST00000594862 VPS37DQ86XT2 251 aa22.13■■□□□ 1.13
SHKBP1-204ENST00000594862 MEIS3Q99687 375 aa22.13■■□□□ 1.13
SHKBP1-204ENST00000594862 FAM205AQ6ZU69 1335 aa22.12■■□□□ 1.13
SHKBP1-204ENST00000594862 ARAP2Q8WZ64 1704 aa22.12■■□□□ 1.13
SHKBP1-204ENST00000594862 ANGEL2Q5VTE6 544 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-204ENST00000594862 VGLL2Q8N8G2 317 aa22.12■■□□□ 1.13
SHKBP1-204ENST00000594862 ZNF408Q9H9D4 720 aa22.12■■□□□ 1.13
SHKBP1-204ENST00000594862 THSD7BQ9C0I4 1608 aa22.12■■□□□ 1.13
SHKBP1-204ENST00000594862 IFIT1P09914 478 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-204ENST00000594862 VEGFBP49765 207 aa22.11■■□□□ 1.13
SHKBP1-204ENST00000594862 PTPN12Q05209 780 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-204ENST00000594862 FMR1Q06787 632 aaKnown RBP eCLIP22.11■■□□□ 1.13
SHKBP1-204ENST00000594862 KIAA0825Q8IV33 1275 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms