RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 EPC1Q9H2F5 836 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 ARHGAP25P42331 645 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 NOP2P46087 812 aaKnown RBP14.08□□□□□ -0.16
LIG1-207ENST00000594759 PLA2G4DQ86XP0 818 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 MRPS27Q92552 414 aaKnown RBP14.08□□□□□ -0.16
LIG1-207ENST00000594759 BRF1Q92994 677 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 MED4Q9NPJ6 270 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 SNX14Q9Y5W7 946 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 FRMD3A2A2Y4 597 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 ARHGAP6O43182 974 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 APOBRQ0VD83 1088 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 VPS53Q5VIR6 699 aa14.08□□□□□ -0.16
LIG1-207ENST00000594759 OPA1O60313 960 aa14.07□□□□□ -0.16
LIG1-207ENST00000594759 NEXNQ0ZGT2 675 aa14.07□□□□□ -0.16
LIG1-207ENST00000594759 CDC37L1Q7L3B6 337 aa14.07□□□□□ -0.16
LIG1-207ENST00000594759 CEP89Q96ST8 783 aa14.07□□□□□ -0.16
LIG1-207ENST00000594759 KRT32Q14532 448 aa14.07□□□□□ -0.16
LIG1-207ENST00000594759 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.07□□□□□ -0.16
LIG1-207ENST00000594759 ZCCHC11Q5TAX3 1644 aaKnown RBP14.07□□□□□ -0.16
LIG1-207ENST00000594759 EIF2AK4Q9P2K8 1649 aaKnown RBP14.07□□□□□ -0.16
LIG1-207ENST00000594759 PLEKHO1Q53GL0 409 aaPredicted RBP14.07□□□□□ -0.16
LIG1-207ENST00000594759 TTC41PQ6P2S7 1318 aa14.07□□□□□ -0.16
LIG1-207ENST00000594759 PHLPP2Q6ZVD8 1323 aa14.07□□□□□ -0.16
LIG1-207ENST00000594759 H2AFXP16104 143 aaPredicted RBP14.06□□□□□ -0.16
LIG1-207ENST00000594759 FANCCQ00597 558 aa14.06□□□□□ -0.16
LIG1-207ENST00000594759 LARP1Q6PKG0 1096 aaKnown RBP14.06□□□□□ -0.16
LIG1-207ENST00000594759 RIC3Q7Z5B4 369 aa14.06□□□□□ -0.16
LIG1-207ENST00000594759 YTHDC2Q9H6S0 1430 aaKnown RBP14.06□□□□□ -0.16
LIG1-207ENST00000594759 TTC21BQ7Z4L5 1316 aa14.06□□□□□ -0.16
LIG1-207ENST00000594759 RASSF8Q8NHQ8 419 aa14.06□□□□□ -0.16
LIG1-207ENST00000594759 RGS12O14924 1447 aa14.06□□□□□ -0.16
LIG1-207ENST00000594759 STIM1Q13586 685 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 RBBP5Q15291 538 aaKnown RBP14.05□□□□□ -0.16
LIG1-207ENST00000594759 NUP133Q8WUM0 1156 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 PREX2Q70Z35 1606 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 FAM160A1Q05DH4 1040 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 TRIM6Q9C030 488 aaPredicted RBP14.05□□□□□ -0.16
LIG1-207ENST00000594759 PTPRCP08575 1304 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 HSF2BPO75031 334 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 KCNA6P17658 529 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 STK11IPQ8N1F8 1099 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 ABCC1P33527 1531 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 PACS2Q86VP3 889 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 PSD3Q9NYI0 1048 aa14.05□□□□□ -0.16
LIG1-207ENST00000594759 AP5Z1O43299 807 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 TRDNQ13061 729 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 AACSQ86V21 672 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 A0A087WWV3 80 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 MPRIPQ6WCQ1 1025 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 RUFY3Q7L099 469 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 GDAP1L1Q96MZ0 367 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 PHF23Q9BUL5 403 aaPredicted RBP14.04□□□□□ -0.16
LIG1-207ENST00000594759 ZNHIT6Q9NWK9 470 aaKnown RBP14.04□□□□□ -0.16
LIG1-207ENST00000594759 CORO7P57737 925 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 ABCC4O15439 1325 aa14.04□□□□□ -0.16
LIG1-207ENST00000594759 GNAT3A8MTJ3 354 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 RRP12Q5JTH9 1297 aaKnown RBP14.03□□□□□ -0.16
LIG1-207ENST00000594759 MSL1Q68DK7 614 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 C11orf57Q6ZUT1 292 aaPredicted RBP14.03□□□□□ -0.16
LIG1-207ENST00000594759 CCDC50Q8IVM0 306 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 PPP2R2CQ9Y2T4 447 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 NSD2O96028 1365 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 RTL1A6NKG5 1358 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 MYL6BP14649 208 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 CEP120Q8N960 986 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 KDM5DQ9BY66 1539 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 GNL3LQ9NVN8 582 aaKnown RBP14.03□□□□□ -0.16
LIG1-207ENST00000594759 RBM8AQ9Y5S9 174 aaKnown RBP14.03□□□□□ -0.16
LIG1-207ENST00000594759 MSH6P52701 1360 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 RNF40O75150 1001 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 GNGT1P63211 74 aa14.03□□□□□ -0.16
LIG1-207ENST00000594759 CLASP1Q7Z460 1538 aa14.02□□□□□ -0.16
LIG1-207ENST00000594759 A0A1B0GVL5 298 aa14.02□□□□□ -0.16
LIG1-207ENST00000594759 DDX58O95786 925 aaKnown RBP14.02□□□□□ -0.16
LIG1-207ENST00000594759 CCT2P78371 535 aaKnown RBP14.02□□□□□ -0.16
LIG1-207ENST00000594759 NYAP1Q6ZVC0 841 aa14.02□□□□□ -0.16
LIG1-207ENST00000594759 MICAL1Q8TDZ2 1067 aa14.02□□□□□ -0.16
LIG1-207ENST00000594759 HYPKQ9NX55 129 aa14.02□□□□□ -0.16
LIG1-207ENST00000594759 FAM169AQ9Y6X4 670 aa14.02□□□□□ -0.16
LIG1-207ENST00000594759 CHUKO15111 745 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 TUBB2AQ13885 445 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 EIF4A2Q14240 407 aaKnown RBP14.02□□□□□ -0.17
LIG1-207ENST00000594759 KLHL10Q6JEL2 608 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 TUBB2BQ9BVA1 445 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 POLR3DP05423 398 aaPredicted RBP14.02□□□□□ -0.17
LIG1-207ENST00000594759 ARID4AP29374 1257 aaPredicted RBP14.02□□□□□ -0.17
LIG1-207ENST00000594759 LTKP29376 864 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 ATP2B2Q01814 1243 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 NCBP3Q53F19 620 aaKnown RBP14.02□□□□□ -0.17
LIG1-207ENST00000594759 INCENPQ9NQS7 918 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 PRDM11Q9NQV5 511 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 PTPRTO14522 1441 aa14.02□□□□□ -0.17
LIG1-207ENST00000594759 GOLGA6BA6NDN3 693 aa14.01□□□□□ -0.17
LIG1-207ENST00000594759 ERCC3P19447 782 aa14.01□□□□□ -0.17
LIG1-207ENST00000594759 MATR3P43243 847 aaKnown RBP eCLIP14.01□□□□□ -0.171e-9■■■■■ 38.3
LIG1-207ENST00000594759 ZKSCAN8Q15776 578 aaPredicted RBP14.01□□□□□ -0.17
LIG1-207ENST00000594759 RHPN1Q8TCX5 695 aa14.01□□□□□ -0.17
LIG1-207ENST00000594759 CAPS2Q9BXY5 557 aa14.01□□□□□ -0.17
LIG1-207ENST00000594759 ZNF446Q9NWS9 450 aa14.01□□□□□ -0.17
LIG1-207ENST00000594759 A6NNZ2 444 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms