RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	MRVI1	Q9Y6F6	885 aa		4.07	□□□□□ -1.76
VMP1-216	ENST00000592790	USP6	P35125	1406 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	NCAPD2	Q15021	1401 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ITSN1	Q15811	1721 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	GOLGA8B	A8MQT2	603 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	KIAA0754	O94854	1291 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC175	P0C221	793 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	U2AF2	P26368	475 aa	Known RBP eCLIP	4.06	□□□□□ -1.76	2e-19	■■■□□ 18.5
VMP1-216	ENST00000592790	FOSB	P53539	338 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	NLRP12	P59046	1061 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	MTX1	Q13505	466 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	DCAF8	Q5TAQ9	597 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ADAL	Q6DHV7	355 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	KIF6	Q6ZMV9	814 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	TMTC2	Q8N394	836 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	CTCFL	Q8NI51	663 aa	Predicted RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ZC3H15	Q8WU90	426 aa	Known RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ZNF274	Q96GC6	653 aa	Predicted RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	DSCC1	Q9BVC3	393 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	RNF41	Q9H4P4	317 aa	Predicted RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	DDX21	Q9NR30	783 aa	Known RBP eCLIP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	PHF8	Q9UPP1	1060 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	AMOTL2	Q9Y2J4	779 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	MROH1	Q8NDA8	1641 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	PTPDC1	A2A3K4	754 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	EFCAB8	A8MWE9	144 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	PES1	O00541	588 aa	Known RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	PIK3C2B	O00750	1634 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ATP5J	P18859	108 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	MKRN3	Q13064	507 aa	Known RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	TRIM14	Q14142	442 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	CT47A1	Q5JQC4	288 aa	Predicted RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	PHLPP2	Q6ZVD8	1323 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	MICALCL	Q6ZW33	695 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	GPR161	Q8N6U8	529 aa	Known RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	TTC14	Q96N46	770 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	CRACR2A	Q9BSW2	395 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	RMND1	Q9NWS8	449 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	DIP2B	Q9P265	1576 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	TBX22	Q9Y458	520 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ERCC6L2	Q5T890	1561 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	RPAP1	Q9BWH6	1393 aa	Predicted RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	SHTN1	A0MZ66	631 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ERICH4	A6NGS2	130 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	NPHP1	O15259	732 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	PFKFB2	O60825	505 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	HOXC9	P31274	260 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	RDX	P35241	583 aa	Known RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	GNG11	P61952	73 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	SSRP1	Q08945	709 aa	Known RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	BRD3	Q15059	726 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	ME3	Q16798	604 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	KRT24	Q2M2I5	525 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	KIF4B	Q2VIQ3	1234 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	HDX	Q7Z353	690 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	TTC6	Q86TZ1	520 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	IP6K1	Q92551	441 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	PCMTD1	Q96MG8	357 aa	Predicted RBP	4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	BPIFA3	Q9BQP9	254 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	CNNM2	Q9H8M5	875 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	USP16	Q9Y5T5	823 aa		4.06	□□□□□ -1.76
VMP1-216	ENST00000592790	IKBKB	O14920	756 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CTIF	O43310	598 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	IARS	P41252	1262 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	NUTM2A	Q8IVF1	878 aa	Predicted RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC82	Q8N4S0	544 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	RNF113A	O15541	343 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	SNRPA1	P09661	255 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CABP4	P57796	275 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	HSP90AB3P	Q58FF7	597 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CDC37L1	Q7L3B6	337 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	PLA2G4D	Q86XP0	818 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CNGA4	Q8IV77	575 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	HS6ST3	Q8IZP7	471 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	ANKRD7	Q92527	254 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC102A	Q96A19	550 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CCDC51	Q96ER9	411 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	MYD88	Q99836	296 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	NLRP2	Q9NX02	1062 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	IFNK	Q9P0W0	207 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	MKRN1	Q9UHC7	482 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	DDX41	Q9UJV9	622 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	RCOR1	Q9UKL0	485 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CTAGE15	A4D2H0	777 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CTAGE9	A4FU28	777 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	GOLGA6L10	A6NI86	522 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	GOLIM4	O00461	696 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CUTA	O60888	179 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	FGFR1OP	O95684	399 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CTAGE8	P0CG41	777 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	METAP2	P50579	478 aa	Known RBP eCLIP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	ETF1	P62495	437 aa	Known RBP	4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	TSGA10IP	Q3SY00	556 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	BEND3	Q5T5X7	828 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	SYT10	Q6XYQ8	523 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	ANKRD13D	Q6ZTN6	518 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CTAGE6	Q86UF2	777 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	FAM114A1	Q8IWE2	563 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	CTAGE4	Q8IX94	777 aa		4.05	□□□□□ -1.76
VMP1-216	ENST00000592790	TRIML1	Q8N9V2	468 aa		4.05	□□□□□ -1.76

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