RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 FAM182BQ5T319 152 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 USPL1Q5W0Q7 1092 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 ZNF589Q86UQ0 364 aaPredicted RBP12.76□□□□□ -0.37
VPS4B-206ENST00000591475 ANKRD7Q92527 254 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 GTF3C6Q969F1 213 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 C5P01031 1676 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 LAMA4Q16363 1823 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 NR1I2O75469 434 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 AIMP1Q12904 312 aaKnown RBP12.76□□□□□ -0.37
VPS4B-206ENST00000591475 RESTQ13127 1097 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 UTP14CQ5TAP6 766 aaKnown RBP12.76□□□□□ -0.37
VPS4B-206ENST00000591475 PGBD1Q96JS3 809 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 ZSCAN16Q9H4T2 348 aaPredicted RBP12.76□□□□□ -0.37
VPS4B-206ENST00000591475 PRDM10Q9NQV6 1147 aa12.76□□□□□ -0.37
VPS4B-206ENST00000591475 RFX7Q2KHR2 1363 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 H3BQV1 296 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 MYL6BP14649 208 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 ZNF165P49910 485 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 DMTNQ08495 405 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 NEXNQ0ZGT2 675 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 IFFO2Q5TF58 517 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 ZSCAN25Q6NSZ9 544 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 FAM196AQ6ZSG2 479 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 RIC3Q7Z5B4 369 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 NEK1Q96PY6 1258 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 RGS17Q9UGC6 210 aaPredicted RBP12.75□□□□□ -0.37
VPS4B-206ENST00000591475 CFAP45Q9UL16 551 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 AFDNP55196 1824 aaKnown RBP12.75□□□□□ -0.37
VPS4B-206ENST00000591475 PALLDQ8WX93 1383 aa12.75□□□□□ -0.37
VPS4B-206ENST00000591475 HSP90B1P14625 803 aaKnown RBP12.74□□□□□ -0.37
VPS4B-206ENST00000591475 ATP5JP18859 108 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 CDC25BP30305 580 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 BRF1Q92994 677 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 U3KPZ7 1027 aaPredicted RBP12.74□□□□□ -0.37
VPS4B-206ENST00000591475 LOC102724428A0A0B4J2F2 783 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 SMTNL1A8MU46 457 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 JAK2O60674 1132 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 IGKV5-2P06315 115 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 SIK1P57059 783 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 CBX1P83916 185 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 LRMPQ12912 555 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 SYCP1Q15431 976 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 DNAJC10Q8IXB1 793 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 SLC4A9Q96Q91 983 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 DNAJC25Q9H1X3 360 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 CLIP2Q9UDT6 1046 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 NRBP1Q9UHY1 535 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 LAMB4A4D0S4 1761 aa12.74□□□□□ -0.37
VPS4B-206ENST00000591475 NEURL1BA8MQ27 555 aa12.73□□□□□ -0.37
VPS4B-206ENST00000591475 ATP2B3Q16720 1220 aa12.73□□□□□ -0.37
VPS4B-206ENST00000591475 Q6ZUG5 572 aa12.73□□□□□ -0.37
VPS4B-206ENST00000591475 LRP10Q7Z4F1 713 aa12.73□□□□□ -0.37
VPS4B-206ENST00000591475 KLHDC4Q8TBB5 520 aa12.73□□□□□ -0.37
VPS4B-206ENST00000591475 GOLGA6L19H0YKK7 550 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 CTAGE5O15320 804 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 A1BGP04217 495 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 ZSCAN20P17040 1043 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-206ENST00000591475 ATP6V1AP38606 617 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 C16orf45Q96MC5 204 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-206ENST00000591475 BCL11BQ9C0K0 894 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-206ENST00000591475 PAXBP1Q9Y5B6 917 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 NHSQ6T4R5 1651 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 NBPF26B4DH59 902 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 CYP19A1P11511 503 aaPredicted RBP12.72□□□□□ -0.37
VPS4B-206ENST00000591475 TNNT1P13805 278 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 GCKRQ14397 625 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 NBPF14Q5TI25 921 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 NBPF10Q6P3W6 841 aaKnown RBP12.72□□□□□ -0.37
VPS4B-206ENST00000591475 SARM1Q6SZW1 724 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 COPS6Q7L5N1 327 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 NBPF15Q8N660 670 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 EDC3Q96F86 508 aaKnown RBP12.72□□□□□ -0.37
VPS4B-206ENST00000591475 LLPHQ9BRT6 129 aaKnown RBP12.72□□□□□ -0.37
VPS4B-206ENST00000591475 COPRSQ9NQ92 184 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 COL15A1P39059 1388 aa12.72□□□□□ -0.37
VPS4B-206ENST00000591475 ZNF609O15014 1411 aa12.71□□□□□ -0.37
VPS4B-206ENST00000591475 PIP4K2AP48426 406 aaPredicted RBP12.71□□□□□ -0.37
VPS4B-206ENST00000591475 TNNI3KQ59H18 835 aa12.71□□□□□ -0.37
VPS4B-206ENST00000591475 POTEAQ6S8J7 498 aa12.71□□□□□ -0.37
VPS4B-206ENST00000591475 SMARCC2Q8TAQ2 1214 aa12.71□□□□□ -0.37
VPS4B-206ENST00000591475 XAGE3Q8WTP9 111 aa12.71□□□□□ -0.37
VPS4B-206ENST00000591475 GTPBP4Q9BZE4 634 aaKnown RBP12.71□□□□□ -0.37
VPS4B-206ENST00000591475 DBNLQ9UJU6 430 aaKnown RBP12.71□□□□□ -0.37
VPS4B-206ENST00000591475 FPGT-TNNI3KV9GXZ4 949 aa12.71□□□□□ -0.37
VPS4B-206ENST00000591475 NEMFO60524 1076 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 STX1AQ16623 288 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 TPD52L1Q16890 204 aaPredicted RBP12.71□□□□□ -0.38
VPS4B-206ENST00000591475 MCMDC2Q4G0Z9 681 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 EPHA10Q5JZY3 1008 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 NAA16Q6N069 864 aaPredicted RBP12.71□□□□□ -0.38
VPS4B-206ENST00000591475 ANKRD13DQ6ZTN6 518 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 PTF1AQ7RTS3 328 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 CACTINQ8WUQ7 758 aaKnown RBP12.71□□□□□ -0.38
VPS4B-206ENST00000591475 DDX11Q96FC9 970 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 MYD88Q99836 296 aa12.71□□□□□ -0.38
VPS4B-206ENST00000591475 METTL22Q9BUU2 404 aaPredicted RBP12.71□□□□□ -0.38
VPS4B-206ENST00000591475 PFKFB2O60825 505 aa12.7□□□□□ -0.38
VPS4B-206ENST00000591475 CYP21A2P08686 494 aa12.7□□□□□ -0.38
VPS4B-206ENST00000591475 HMGB1P09429 215 aaKnown RBP12.7□□□□□ -0.38
VPS4B-206ENST00000591475 FGD1P98174 961 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms